Sagar Patel, Ph.D. Email and Phone Number
Sagar Patel, Ph.D. work email
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Sagar Patel, Ph.D. personal email
I am a dedicated research professional with a passion for leveraging cutting-edge bioinformatics techniques to unravel complex biological questions. With a solid educational foundation including a Bachelor of Science (BS), Master of Science (MS), and Doctor of Philosophy (Ph.D.), coupled with five years of Post-Doctoral experience, I bring a wealth of expertise to the field.I have experience with diverse sequencing technologies, including Illumina, PacBio HiFi, Bionano, Nanopore, and Hi-C, to proficiently analyze Genomics, Transcriptomics, Proteomics, and Clinical data. My skill set extends to machine learning, predictive modeling, and data visualization, allowing me to extract meaningful insights from complex datasets. I excel in creating reproducible and scalable data analysis workflows using tools like Snakemake, and I have experience for building interactive web applications for bioinformatics analysis through RShiny development.Throughout my career, I have had the privilege of collaborating with esteemed research scientists and professors, resulting in impactful publications in peer-reviewed journals. I am driven by a relentless pursuit of scientific excellence and am committed to contributing meaningfully to advancements in the field.
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Bioinformatics Senior Research AssociateEastern Virginia Medical SchoolUnited States
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Career TransitionCareer Break Apr 2024 - Present- Developed a web application (Riboz ML) using machine learning (ML) algorithms to predict genes from bulk RNA-Seq data.- Riboz ML: https://www.ribozml.com/- Analyzed TCGA data of prostate cancer and developed methods to integrate bulk RNA-Seq data and clinical data of the same patient.- Developed a program using python programming language to classify cancer patient to high risk and low risk using machine learning (ML) algorithms.- Developed an R Shiny web application (GENOXA) to integrate and analyze bulk RNA-Seq data and clinical data of the same patient. Users can also build ML based predictive models with top differentially expressed genes.
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Bioinformatics Senior Research AssociateEastern Virginia Medical School Sep 2021 - Mar 2024Norfolk, Virginia, Us- Developed PROMOR App : R Shiny App (web application) to analyze Liquid-Chromatography Mass Spectrometry (LC-MS) data.- PROMOR App: https://sgrbnf.shinyapps.io/PROMOR_App/- PROMOR App web application which was published in October 2022 and was impactful in the proteomics community with more than 1000 users from across the world accessing PROMOR App for their data analysis. - Presented work at BIBM22 and ISMB22 conferences.- Published research papers in journals and proceedings.
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Post Doctoral Research AssociateSaint Louis University Jan 2020 - Aug 2021Saint Louis, Mo, Us- Developed a De novo genome assembly and annotation of Vitis Chambourcin species using PacBio HiFi and Bionano data.- Worked on 57 genomes (40X of Illumina data) of Vitis genus species collected from different locations in the United States for "grapevine root stock diversity" project.- Developed reproducible pipelines using Snakemake for DNA and RNA-Seq data. -
Post Doctoral Research AssociateUniversity Of North Carolina At Charlotte Jan 2019 - Nov 2019Charlotte, Nc, UsI worked on the bivalve Megalonaias nervosa gene prediction using Illumina RNA-Seq data and did annotation using Gene Ontology and KEGG database. -
Post Doctoral Research AssociateSouth Dakota State University Jun 2015 - Dec 2017Brookings, South Dakota, UsDeveloped first ever de novo heterozygous genome assembly for vitis species using Illumina and PacBio data. Then extended study with gene prediction and gene annotation of vitis species and did comparative genomics etc. Collaborated with USDA for leafy spurge genome and published in WEED SCIENCE journal (Second author). Compared several genome assembler for comparative study.*Post-Doc details:- Developed first ever genome assemblies of Vitis and spurge species.- One post-doc work published in *Nature Horticulture Research* journal (First author).- One post-doc work published in *BMC GENOMICS* (First author).- One post-doc paper published in *Weed Science* journal (Second author).- Collaboration with scientists for better research (With USDA and other collaborators) - Three Talks- Five poster presentations- Trained five undergrad students- Worked on grant proposals- Reviewed manuscripts- One IEEE Conference Proceeding publication (cited in *Nature Methods*).- Wrote and reviewed manuscripts
Sagar Patel, Ph.D. Skills
Sagar Patel, Ph.D. Education Details
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Sardar Patel University (Spu), Vallabh VidyanagarBioinformatics -
Sardar Patel University (Spu), Vallabh VidyanagarBioinformatics
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Sardar Patel University (Spu), Vallabh VidyanagarBioinformatics
Frequently Asked Questions about Sagar Patel, Ph.D.
What company does Sagar Patel, Ph.D. work for?
Sagar Patel, Ph.D. works for Eastern Virginia Medical School
What is Sagar Patel, Ph.D.'s role at the current company?
Sagar Patel, Ph.D.'s current role is Bioinformatics Senior Research Associate.
What is Sagar Patel, Ph.D.'s email address?
Sagar Patel, Ph.D.'s email address is sa****@****slu.edu
What schools did Sagar Patel, Ph.D. attend?
Sagar Patel, Ph.D. attended Sardar Patel University (Spu), Vallabh Vidyanagar, Sardar Patel University (Spu), Vallabh Vidyanagar, Sardar Patel University (Spu), Vallabh Vidyanagar.
What skills is Sagar Patel, Ph.D. known for?
Sagar Patel, Ph.D. has skills like Bioinformatics, Genome Assembly, Comparative Genomics, Gene Expression, Ngs Data Analysis, Sequence Analysis, Genomics, Database Design, Evolutionary Biology, Phylogenetics, Sequence Alignment, Web Design.
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