Sagar Patel, Ph.D. Email & Phone Number

United States

- Developed a web application (Riboz ML) using machine learning (ML) algorithms to predict genes from bulk RNA-Seq data.- Riboz ML: https://www.ribozml.com/- Analyzed TCGA data of prostate cancer and developed methods to integrate bulk RNA-Seq data and clinical data of the same patient.- Developed a program using python programming language to classify cancer patient to high risk and low risk using machine learning (ML) algorithms.- Developed an R Shiny web application (GENOXA) to integrate and analyze bulk RNA-Seq data and clinical data of the same patient. Users can also build ML based predictive models with top differentially expressed genes.

Norfolk, Virginia, Us

- Developed PROMOR App : R Shiny App (web application) to analyze Liquid-Chromatography Mass Spectrometry (LC-MS) data.- PROMOR App: https://sgrbnf.shinyapps.io/PROMOR_App/- PROMOR App web application which was published in October 2022 and was impactful in the proteomics community with more than 1000 users from across the world accessing PROMOR App for their data analysis. - Presented work at BIBM22 and ISMB22 conferences.- Published research papers in journals and proceedings.

Saint Louis, Mo, Us

- Developed a De novo genome assembly and annotation of Vitis Chambourcin species using PacBio HiFi and Bionano data.- Worked on 57 genomes (40X of Illumina data) of Vitis genus species collected from different locations in the United States for "grapevine root stock diversity" project.- Developed reproducible pipelines using Snakemake for DNA and RNA-Seq data.

Charlotte, Nc, Us

I worked on the bivalve Megalonaias nervosa gene prediction using Illumina RNA-Seq data and did annotation using Gene Ontology and KEGG database.

Brookings, South Dakota, Us

Developed first ever de novo heterozygous genome assembly for vitis species using Illumina and PacBio data. Then extended study with gene prediction and gene annotation of vitis species and did comparative genomics etc. Collaborated with USDA for leafy spurge genome and published in WEED SCIENCE journal (Second author). Compared several genome assembler for comparative study.*Post-Doc details:- Developed first ever genome assemblies of Vitis and spurge species.- One post-doc work published in *Nature Horticulture Research* journal (First author).- One post-doc work published in *BMC GENOMICS* (First author).- One post-doc paper published in *Weed Science* journal (Second author).- Collaboration with scientists for better research (With USDA and other collaborators) - Three Talks- Five poster presentations- Trained five undergrad students- Worked on grant proposals- Reviewed manuscripts- One IEEE Conference Proceeding publication (cited in *Nature Methods*).- Wrote and reviewed manuscripts

Doctor Of Philosophy (Phd), Bioinformatics

Master Of Science (M.Sc.), Bioinformatics

Bachelor Of Science (B.Sc.), Bioinformatics