Souvik Dey Email and Phone Number
Research scientist with more than seven years of experience in computational chemistry and biophysics. Expertise in solving the challenges related to biomolecular modeling and simulations. Carried out several independent as well as experimentally collaborated research projects. Actively exploring the applications of machine learning in understanding underlying chemistry behind functions of protein structures. Skillset involves working with Linux based architecture and high-performance computing clusters. Passionate about research and an avid team player.
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Research Scientist IiDod Biotechnology Hpc Software Applications InstituteFrederick, Md, Us -
Computational Research ScientistDod Biotechnology Hpc Software Applications Institute Oct 2023 - PresentUs1. Designed graph convolution neural network and transfer learning-based models for screening ultra-large chemical libraries to discover novel therapeutics and predict their toxicity against military-relevant targets.2. Investigated the application of recurrent neural networks and transformers to improve model performance on imbalanced public bioactivity datasets. -
Graduate Research AssistantUniversity Of Illinois At Chicago Aug 2018 - Sep 2023Chicago, Il, Us1. Designed a comprehensive molecular dynamics (MD) simulations based protocol to elucidate the role of intramolecular interactions and secondary structures in determining sequence-dependent backbone dynamics of disordered proteins. 2. Decoded and characterized the structure, dynamics, binding, and membrane association of FtsQ and SepF, two Mycobacterium tuberculosis drug targets, in collaboration with experimental researchers. Achieved high accuracy in alignment with experimental results, providing deeper insights into these proteins' roles in cell division.3. Identified the mechanism of synergistic activation and allosteric regulation of the intrinsically disordered WASP and N-WASP proteins in response to lipids and proteins. Estimated the free energy of activation using umbrella sampling and the string method. -
Graduate Teaching AssistantUniversity Of Illinois At Chicago Aug 2018 - Dec 2019Chicago, Il, UsTaught General Chemistry I and II (Fall 2018, Spring 2019, Summer 2019 and Fall 2019). Responsibilities included Leading laboratory sessions and discussion classes, Grading and Holding office hours -
Computational Chemistry InternNeurox1 Inc. May 2022 - Aug 2022Austin, Tx, UsScreened over 1 million small molecules against various neurological targets using ADME filtering and docking techniques. Utilized pharmacophore modeling to identify binding sites and performed MM-GBSA calculations to rank new compounds. -
Master ThesisIndian Association For The Cultivation Of Science Aug 2017 - Jul 2018InConducted hybrid QM/MM (Quantum Mechanics / Molecular Mechanics) simulations using the replica-exchange string method to identify the mechanisms of ATP hydrolysis in kinesin motor proteins. Computed the free energy of hydrolysis utilizing umbrella sampling to rank the most viable options. -
Summer InternUniversity Of Groningen Jul 2017 - Aug 2017Groningen, NlMolecular Dynamics simulations to understand DNA damage and repair in catalyzed by a photolyase. -
Summer InternIndian Institute Of Technology, Bombay Jun 2016 - Aug 2016Mumbai, Maharashtra, InMolecular Dynamics simulations to elucidate unfolding of an S-Peptide analogue in presence of urea and attenuation of this effect by introducing an ammonium based ionic liquid along with parametrization of these non-standard residues using Gaussian -
Summer InternBhabha Atomic Research Centre Jun 2014 - Jul 2015InUsed density functional theory to compare binding poses, interaction energies and density of states of the four DNA Nucleobases on two-dimensional Molybdenum Disulphide and Carbon Nitride sheets.
Souvik Dey Education Details
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University Of Illinois ChicagoComputational Chemistry -
Visva Bharati, ShantiniketanChemistry -
Central Modern SchoolScience -
Oxford High SchoolScience
Frequently Asked Questions about Souvik Dey
What company does Souvik Dey work for?
Souvik Dey works for Dod Biotechnology Hpc Software Applications Institute
What is Souvik Dey's role at the current company?
Souvik Dey's current role is Research Scientist II.
What schools did Souvik Dey attend?
Souvik Dey attended University Of Illinois Chicago, Visva Bharati, Shantiniketan, Central Modern School, Oxford High School.
Who are Souvik Dey's colleagues?
Souvik Dey's colleagues are Emmaretta Beard, Sridevi Nagaraja, Jose Enrique Rubio, Shawn Lewis, Lorenzo Spencer, Daniel Smith, Dorothy Appel.
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