Souvik Dey

Souvik Dey Email and Phone Number

Frederick, MD, US
Souvik Dey's Location
Frederick, Maryland, United States, United States
About Souvik Dey

Research scientist with more than seven years of experience in computational chemistry and biophysics. Expertise in solving the challenges related to biomolecular modeling and simulations. Carried out several independent as well as experimentally collaborated research projects. Actively exploring the applications of machine learning in understanding underlying chemistry behind functions of protein structures. Skillset involves working with Linux based architecture and high-performance computing clusters. Passionate about research and an avid team player.

Souvik Dey's Current Company Details
DoD Biotechnology HPC Software Applications Institute

Dod Biotechnology Hpc Software Applications Institute

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Research Scientist II
Frederick, MD, US
Website:
bhsai.org
Employees:
28
Souvik Dey Work Experience Details
  • Dod Biotechnology Hpc Software Applications Institute
    Research Scientist Ii
    Dod Biotechnology Hpc Software Applications Institute
    Frederick, Md, Us
  • Dod Biotechnology Hpc Software Applications Institute
    Computational Research Scientist
    Dod Biotechnology Hpc Software Applications Institute Oct 2023 - Present
    Us
    1. Designed graph convolution neural network and transfer learning-based models for screening ultra-large chemical libraries to discover novel therapeutics and predict their toxicity against military-relevant targets.2. Investigated the application of recurrent neural networks and transformers to improve model performance on imbalanced public bioactivity datasets.
  • University Of Illinois At Chicago
    Graduate Research Assistant
    University Of Illinois At Chicago Aug 2018 - Sep 2023
    Chicago, Il, Us
    1. Designed a comprehensive molecular dynamics (MD) simulations based protocol to elucidate the role of intramolecular interactions and secondary structures in determining sequence-dependent backbone dynamics of disordered proteins. 2. Decoded and characterized the structure, dynamics, binding, and membrane association of FtsQ and SepF, two Mycobacterium tuberculosis drug targets, in collaboration with experimental researchers. Achieved high accuracy in alignment with experimental results, providing deeper insights into these proteins' roles in cell division.3. Identified the mechanism of synergistic activation and allosteric regulation of the intrinsically disordered WASP and N-WASP proteins in response to lipids and proteins. Estimated the free energy of activation using umbrella sampling and the string method.
  • University Of Illinois At Chicago
    Graduate Teaching Assistant
    University Of Illinois At Chicago Aug 2018 - Dec 2019
    Chicago, Il, Us
    Taught General Chemistry I and II (Fall 2018, Spring 2019, Summer 2019 and Fall 2019). Responsibilities included Leading laboratory sessions and discussion classes, Grading and Holding office hours
  • Neurox1 Inc.
    Computational Chemistry Intern
    Neurox1 Inc. May 2022 - Aug 2022
    Austin, Tx, Us
    Screened over 1 million small molecules against various neurological targets using ADME filtering and docking techniques. Utilized pharmacophore modeling to identify binding sites and performed MM-GBSA calculations to rank new compounds.
  • Indian Association For The Cultivation Of Science
    Master Thesis
    Indian Association For The Cultivation Of Science Aug 2017 - Jul 2018
    In
    Conducted hybrid QM/MM (Quantum Mechanics / Molecular Mechanics) simulations using the replica-exchange string method to identify the mechanisms of ATP hydrolysis in kinesin motor proteins. Computed the free energy of hydrolysis utilizing umbrella sampling to rank the most viable options.
  • University Of Groningen
    Summer Intern
    University Of Groningen Jul 2017 - Aug 2017
    Groningen, Nl
    Molecular Dynamics simulations to understand DNA damage and repair in catalyzed by a photolyase.
  • Indian Institute Of Technology, Bombay
    Summer Intern
    Indian Institute Of Technology, Bombay Jun 2016 - Aug 2016
    Mumbai, Maharashtra, In
    Molecular Dynamics simulations to elucidate unfolding of an S-Peptide analogue in presence of urea and attenuation of this effect by introducing an ammonium based ionic liquid along with parametrization of these non-standard residues using Gaussian
  • Bhabha Atomic Research Centre
    Summer Intern
    Bhabha Atomic Research Centre Jun 2014 - Jul 2015
    In
    Used density functional theory to compare binding poses, interaction energies and density of states of the four DNA Nucleobases on two-dimensional Molybdenum Disulphide and Carbon Nitride sheets.

Souvik Dey Education Details

  • University Of Illinois Chicago
    University Of Illinois Chicago
    Computational Chemistry
  • Visva Bharati, Shantiniketan
    Visva Bharati, Shantiniketan
    Chemistry
  • Central Modern School
    Central Modern School
    Science
  • Oxford High School
    Oxford High School
    Science

Frequently Asked Questions about Souvik Dey

What company does Souvik Dey work for?

Souvik Dey works for Dod Biotechnology Hpc Software Applications Institute

What is Souvik Dey's role at the current company?

Souvik Dey's current role is Research Scientist II.

What schools did Souvik Dey attend?

Souvik Dey attended University Of Illinois Chicago, Visva Bharati, Shantiniketan, Central Modern School, Oxford High School.

Who are Souvik Dey's colleagues?

Souvik Dey's colleagues are Emmaretta Beard, Sridevi Nagaraja, Jose Enrique Rubio, Shawn Lewis, Lorenzo Spencer, Daniel Smith, Dorothy Appel.

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