Senior Programmer Analyst
CurrentMember of the Personalized Medicine project within Data Warehouse Group supporting NorthShore’s Center for Bioinformatics and Computational Biology team’s web-based application that processes sequenced genomic data. Built the API interface in that app that communicates with 3rd party provider PierianDx for the analysis of genomic data and to AmbryGenetics to retrieve results of blood samples. The app pulls down a resultant PDF and associated discrete data elements and makes it available to physicians and oncologists by means of EPIC.Python 3Django / Django REST Framework / multiprocessing / sftp / more modulesFlaskMS SQL ServerPostgresGIT/SVNGenetic data concepts; vcf format, next-generation sequencingNeo4j Graph DatabaseAssessing the viability of using graph databases within the python-based app or as part of the ETL process for the data warehouse.Machine and Deep Learning (13-week course at Institute of Professional Development at DePaul University - Jan-Mar 2020). Focused on fundamentals of machine learning; hands on assignments using python and R and using several online platforms (e.g. IBM's, Microsofts's, etc).Cloud Computing (13-week course at Institute of Professional Development at DePaul University - Jan-Mar 2019). Broad course that studied the different aspects of cloud services. Apache Spark (13 week course at Institute of Professional Development at DePaul University - Sept-Dec 2018)Final project: using Apache Spark to analyze a genomic variant file (vcf) in python. Used Cloudera. Big Data with Hadoop (13 week course at Institute of Professional Development at DePaul University - Sept-Dec 2016) Final project: using ruby with Hadoop (streaming). Used Cloudera. Various online courses: numpy, pandas