Thomas Schaffter

Thomas Schaffter Email and Phone Number

Team Lead | Data Challenge Specialist | Software Architect & Engineer | DevSecOps Enthusiast | PhD @ Sage Bionetworks
Thomas Schaffter's Location
Greater Seattle Area, United States, United States
Thomas Schaffter's Contact Details

Thomas Schaffter work email

Thomas Schaffter personal email

About Thomas Schaffter

I am a Project Owner and Lead Full-Stack Software Engineer at Sage Bionetworks. In the past, I was a postdoctoral researcher at IBM where I organized one of the largest DREAM Challenges (>1000 participants, >14 TB of data, $1M prize money). Two of the best-performing participating teams have obtained FDA approval for their AI-powered breast cancer detection tools.In a nutshell, I have a broad set of experience, interests, and skills reflected by my academic and professional career path. I studied microengineering - a mix of mechanics, electronics and computer science - at the Swiss Federal Institute of Technology Lausanne (EPFL). During my PhD, I started contributing to the organization of DREAM Challenges, a non-profit initiative for advancing biomedical and systems biology research via crowd-sourced competitions.I do have broad interests and skills and I am proficient in full stack development (backend and frontend), UI/UX development, and data visualization. I also love IoT development, network security and exploring new technologies that improve our reproducibility and productivity (e.g. monorepo, development containers, low-code development).My background in engineering and research enables me to build bridges between teams and identify new business opportunities.

Thomas Schaffter's Current Company Details
Sage Bionetworks

Sage Bionetworks

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Team Lead | Data Challenge Specialist | Software Architect & Engineer | DevSecOps Enthusiast | PhD
Thomas Schaffter Work Experience Details
  • Sage Bionetworks
    Principal Research Software Engineer
    Sage Bionetworks Feb 2023 - Present
    Seattle, Washington, Us
  • Sage Bionetworks
    Senior Research Software Engineer
    Sage Bionetworks Feb 2019 - Feb 2023
    Seattle, Washington, Us
    Past and active projects:- OpenChallenges (Product Owner, Architect & Lead Software Engineer (team of 3 engineers))- NLP Sandbox (Product Owner, Architect & Lead Software Engineer (team of 4 engineers))- EHR DREAM Challenge: COVID-19 (Co-Project Lead)- EHR DREAM Challenge: Patient Mortality Prediction (Project Lead)- Development of the Sage Bio Collaboration Portal (Architect, Lead Software Developer)- Metadata Automation DREAM Challenge (Organizer)Technologies (current): Event-driven architecture, microservice, messaging system, Elasticsearch, monorepo (Nx), dev container, API-first development, low-code development, TypeScript-Angular, Java-Spring, Python.
  • Ibm
    Postdoctoral Researcher
    Ibm Sep 2015 - Dec 2018
    Armonk, New York, Ny, Us
    I led the organization of the Digital Mammography DREAM Challenge, a world-wide scientific challenge with a cash award of up to $1 million to improve breast cancer screening using deep learning algorithms, which gathered 1,272 registered participants. Two of the best-performing teams obtained FDA approval for their AI-powered breast cancer detection tools (Therapixel and DeapHealth).
  • Icahn School Of Medicine At Mount Sinai
    Visiting Researcher
    Icahn School Of Medicine At Mount Sinai Sep 2015 - Dec 2018
    New York, Ny, Us
    Collaborated with clinicians and researchers at Mount Sinai to investigate how AI can be applied to improve breast cancer screening.
  • Self-Funded
    Sabbatical
    Self-Funded Jan 2014 - Aug 2015
    After the completion of my PhD thesis, I traveled in the United States and in Europe. During my spare time, I explored technologies to develop cloud applications and services (Node.js, Angular, Material Design, Reactive Programming, REST API, MongoDB).
  • Epfl (École Polytechnique Fédérale De Lausanne)
    Phd Researcher
    Epfl (École Polytechnique Fédérale De Lausanne) Sep 2008 - Dec 2013
    Lausanne, Vaud, Ch
    During my PhD thesis, I developed a set of models and computational tools to advance our understanding of gene networks and the cellular behavior they underlie, as well as contribute to enable predictive and personalized medicine (see the projects GeneNetWeaver and WingJ).As a member of the SystemsX.ch initiative, I initiated and led an interdisciplinary project in biology, physics, and computer sciences that involved researchers and engineers from three laboratories at the EPFL (Laboratory of Intelligent Systems, Biomedical Imaging Group) and the University of Basel (Markus Affolter's lab).
  • Epfl (École Polytechnique Fédérale De Lausanne)
    System Administrator
    Epfl (École Polytechnique Fédérale De Lausanne) Jan 2009 - Feb 2012
    Lausanne, Vaud, Ch
    Responsible for the upkeep, configuration, and reliable operation of the computer system at the Laboratory of Intelligent Systems.

Thomas Schaffter Skills

Algorithms Bioinformatics Computer Science Software Development Machine Learning C++ Computational Biology Programming Data Analysis Java Python Angular R Mongodb Mysql Adobe Creative Suite Html5 Amazon Web Services Docker Data Science Crowdsourcing R&d Software Engineering Image Processing Optimization Algorithms Human Computer Interface Artificial Intelligence Neural Networks Evolutionary Algorithms Graph Theory Scientific Presentation Consensus Methods Web Applications

Thomas Schaffter Education Details

  • Epfl
    Epfl
    Biotechnology & Bioengineering
  • Epfl
    Epfl
    Microengineering

Frequently Asked Questions about Thomas Schaffter

What company does Thomas Schaffter work for?

Thomas Schaffter works for Sage Bionetworks

What is Thomas Schaffter's role at the current company?

Thomas Schaffter's current role is Team Lead | Data Challenge Specialist | Software Architect & Engineer | DevSecOps Enthusiast | PhD.

What is Thomas Schaffter's email address?

Thomas Schaffter's email address is th****@****ail.com

What schools did Thomas Schaffter attend?

Thomas Schaffter attended Epfl, Epfl.

What are some of Thomas Schaffter's interests?

Thomas Schaffter has interest in Japanese Culture, Badminton.

What skills is Thomas Schaffter known for?

Thomas Schaffter has skills like Algorithms, Bioinformatics, Computer Science, Software Development, Machine Learning, C++, Computational Biology, Programming, Data Analysis, Java, Python, Angular.

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