Varun Dwaraka, Phd Email and Phone Number
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I am a scientist with extensive proven experience in the development of Next Generation Sequencing (NGS; RNA-Seq, ChIP-Seq, Bisulfite Seq) and array-based (Affymetrix, EPIC Array) analytical pipelines using univariate, multivariate, and machine learning methods. I am also skilled in analyzing single-cell NGS datasets (e.g. single-cell RNA-Seq), and the associated tools available to do so. I have proven expertise in the visualization, and interpretation, of results for the end goal of publishing research. I am also an effective communicator, presenting at international and national conferences in poster presentations and talks. I also routinely publish as a primary or co-author in international, peer-reviewed journals. I have worked in non-model and model organisms, generated bioinformatic resources for the scientific community, published peer-reviewed articles, and successfully designed data analysis pipelines to answer various questions related to regeneration biology, disease progression, cancer biomarker identification, sex-based gene expression differences, and ageing research.I am passionate about learning and implementing machine learning methods to advance predictive medicine and advance our understanding of the biology of aging.As an educator, I am passionate about sharing knowledge that balances approachability and accuracy. This is a responsibility I take seriously, as I hope that knowledge transfer opens doors for others to new fields while ensuring accurate knowledge is ingested. I employ this passion through lectures at national and international conferences, and lectures through my faculty positions at the American Board of Precision Medicine and the Geneva College of Longevity Science.
Trudiagnostic
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- trudiagnostic.com
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Director Of Research And Principal InvestigatorTrudiagnosticLexington, Ky, Us -
Director Of EpigenomicsAmerican Board Of Precision Medicine Sep 2024 - PresentWilmington, De, Ushttps://www.theabopm.org/about-abopm -
Director Of Bioinformatics And Principal InvestigatorTrudiagnostic Aug 2024 - PresentLexington, Kentucky, UsAs the Director of Bioinformatics for TruDiagnostic, I am tasked with guiding the development and implementation of pipelines that analyze DNA methylation measurements from blood and saliva samples quantified on the Illumina EPIC array. These pipelines output biological age metrics computed from published epigenetic clock algorithms, as well as a few metrics reported by algorithms, developed internally. For research development, I serve as a Principal Investigator in collaborations with academic/research institutions on projects such as developing and assessing epigenetic predictors (e.g., epigenetic clocks, surrogate estimates). We contribute to the experimental design of projects handling epigenomic, genomic, and transcriptomic datasets, the analysis and interpretation of the data, and writing of studies. Currently co-authored and primary author on >15 publications (peer-reviewed and pre-prints). -
Head Of BioinformaticsTrudiagnostic Jul 2021 - Aug 2024Lexington, Kentucky, Us -
FacultyGeneva College Of Longevity Science May 2024 - PresentCité, Geneva, ChThe faculty at the Geneva College of Longevity Science (GCLS) is a dynamic blend of interdisciplinary experts, each bringing a unique perspective to the study of longevity and its related fields. Comprising renowned researchers, medical professionals, bioethicists, and data scientists, the teaching staff at GCLS fosters an environment of collaboration and innovation. With backgrounds in genetics, medicine, pharmacy, gerontology, nutrition, psychology, and public health, they work synergistically to explore the multifaceted aspects of extending human lifespan and improving quality of life. Their commitment to interdisciplinary approaches ensures that students gain a comprehensive understanding of longevity science.https://gcls.study/staffhttps://gcls.study/home -
Scientific Advisory BoardSrw Laboratories Feb 2023 - PresentAuckland, NzAs part of the Scientific Advisory board, I provide expertise in the implementation and interpretation of Epigenetic testing. https://scienceresearchwellness.com/pages/scientists -
FellowForesight Institute Nov 2022 - Dec 2023San Francisco, Ca, Us -
Graduate Student ResearcherUniversity Of Kentucky Aug 2015 - Jul 2021Lexington, Ky, UsPI: S. Randal Voss, PhDPertinent experiences include: 1) Identification of significantly and differentially expressed genes using a combinatorial microarray and RNA-Sequencing analytical pipeline. 2) The construction of de novo transcriptomes of non-model salamander species. 3) The development, analysis, and interpretation of whole genome bisulfite sequencing (WGBS) datasets and ChIP-Seq to better understand epigenetic organization within salamanders genomes.4) Using discretization and correlation based methodologies to infer gene correlation networks from expression datasets.5) Published 4 papers (1 first author primary literature, 2 co-author primary literature, and 1 first author review) -
Teaching Assistant - Lab InstructorUniversity Of Kentucky Aug 2015 - May 2019Lexington, Ky, UsBIO 315 (Spring 2019): Cell Biology LabBIO 309 (Fall 2018): Microbiology LabBIO 304 (Fall 2016): Principles of Genetics LabBIO 155 (Fall 2015-Spring 2016): Intro to Biology Lab -
Bioinformatics AnalystUcsf Jun 2014 - Jul 2015San Francisco, California, UsAnalyzed RNA-Sequence data from patient tissue samples sent to our lab from collaborators and other researchers from our lab. Utilized the Tuxedo RNA-Seq suite (Tophat, Cuffdiff, and CummeRbund), Pathway analysis tools (DAVID and GSEA), Treeview and Cluster package, data visualization (Cytoscape). Implementing data analysis pipelines using Python (SciPy) and R (edgeR, RUV-Seq and SVA-Seq R packages).PI: Sarah T. Arron, MD, PhD -
Research AssistantCarnegie Institution For Science, Department Of Plant Biology Jun 2013 - Jul 2014Washington, Dc, UsUnderstanding the genetic mechanisms related to Arabidopsis thaliana via the creation and observation of gene expression of its transgenic variants.Utilized E.coli transformations in order to generate recombinant plasmids and checked plasmid content via gel electrophoresis and PCR amplification.Used recombinant plasmids to create transgenic Arabidopsis thaliana variants and observed their gene expressions by using confocal imaging. Adviser: Shahram Emami PhDPI: Jose R. Dinneny PhD -
Undergraduate ResearcherUc Santa Cruz Sep 2013 - Dec 2013Santa Cruz, Ca, UsUCSC Paleogenomics LabExtraction of Ancient DNA. Adviser: Pete Heintzman PhDPI: Beth Shapiro PhD Co-PI: Richard Edward Green PhD -
Plant Metabolic Network InternCarnegie Institution For Science, Department Of Plant Biology Jul 2012 - Sep 2012Washington, Dc, UsResearching extensively on compounds, genes, and enzymes related to the metabolic pathways of Arabidopsis thaliana via primary literature found in PubMed, Google Scholar, and Textpresso along with information from databases such as KNApSAcK, KEGG, ChEBI, and MetaCyc. Contributing to the construction of an Arabidopsis thaliana public database (AraCyc) that catalogs information of its metabolic pathways and metabolites.Assisting in the construction of a metabolic pathway database for Chlamydomonas reinhardtii, named ChlamyCyc 2, by evaluating mappings of proteome sequences between ChlamyCyc 1 (previous version) and ChlamyCyc 2 via protein BLAST. Maintaining and editing the various online databases that are part of the Plant Metabolic Network (specifically ChlamyCyc and AraCyc).Adviser: Kate Dreher PhDPI: Sue Rhee PhD
Varun Dwaraka, Phd Skills
Varun Dwaraka, Phd Education Details
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University Of KentuckyBiology -
University Of California, Santa CruzAnd Developmental Biology -
Foothill CollegeTransfer -
Monta Vista High School
Frequently Asked Questions about Varun Dwaraka, Phd
What company does Varun Dwaraka, Phd work for?
Varun Dwaraka, Phd works for Trudiagnostic
What is Varun Dwaraka, Phd's role at the current company?
Varun Dwaraka, Phd's current role is Director of Research and Principal Investigator.
What is Varun Dwaraka, Phd's email address?
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What is Varun Dwaraka, Phd's direct phone number?
Varun Dwaraka, Phd's direct phone number is +140883*****
What schools did Varun Dwaraka, Phd attend?
Varun Dwaraka, Phd attended University Of Kentucky, University Of California, Santa Cruz, Foothill College, Monta Vista High School.
What are some of Varun Dwaraka, Phd's interests?
Varun Dwaraka, Phd has interest in Scientific Research, Fitness And Health, Science And Technology, Digital Photography, Professional Sound Recording Solutions, Health.
What skills is Varun Dwaraka, Phd known for?
Varun Dwaraka, Phd has skills like Research, Data Analysis, R, Python 3.3, Jmp, Unix Shell Scripting, Ucsc Genome Browser, Public Speaking, Gel Electrophoresis, Pcr, Tutoring, Bacterial Transformation.
Who are Varun Dwaraka, Phd's colleagues?
Varun Dwaraka, Phd's colleagues are Jamie Kennedy, Paul Small, Bryce Looney, Daniel Phelps, Hannah Foster, Mckenxzy Boateng, Emily Miller.
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