Nathan Watson-Haigh

Nathan Watson-Haigh Email and Phone Number

Associate Director of Genome Informatics at Alkahest | Adelaide, Australia | Linux, Workflows & Reproducibility @ Alkahest, Inc.
san carlos, california, united states
Nathan Watson-Haigh's Location
Greater Adelaide Area, Australia
Nathan Watson-Haigh's Contact Details

Nathan Watson-Haigh personal email

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About Nathan Watson-Haigh

Nathan has almost 20 years' experience in the field of bioinformatics with expertise in cereal genomics, transcriptomics, system biology, phylogenetics, bioinformatics training, Linux sysadmin, pipeline development, high-performance and cloud computing.Nathan's background was first in biology, by undergraduate training, and then in bioinformatics by PhD. During his PhD he investigated the location of the root, the oldest part, of the eukaryotic tree of life. At this time he was also exposed to high-performance computing infrastructure and the Linux operating system.Following his PhD he took up a bioinformatics postdoctoral position on a project looking at the range margins of Arabidopsis lyrata ssp. petraea. During this time, Nathan was responsible for the systems administration of several Linux machines and was first exposed to metabolomics data analysis.Nathan then joined CSIRO as a postdoctoral research fellow using system biology approaches to investigate complex production traits in livestock species.Nathan got his first taste of Next Generation Sequencing (NGS) data when he joined the Australian Wine Research Institute (AWRI) as a senior bioinformatician. It was here where he spearheaded efforts to establish an unincorporated bioinformatics interest group in South Australia (BIG SA) and led the establishment of a cloud-based Bioinformatics Training Platform (BTP) in collaboration with Bioplatforms Australia (BPA), CSIRO Bioinformatics Core and the European Bioinformatics Institute (EBI).Nathan joined the ACPFG in the School of Ag, Food & Wine in late 2013. He played a pivotal role in the development and application of analytical approaches and pipelines to NGS-based wheat genomics data sets. He was responsible for setting up and managing the Linux-based scientific computing infrastructure, including several large memory compute nodes configured as a Slurm cluster, 100's TBytes of clustered filesystem storage and around 2 dozen virtual machines.

Nathan Watson-Haigh's Current Company Details
Alkahest, Inc.

Alkahest, Inc.

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Associate Director of Genome Informatics at Alkahest | Adelaide, Australia | Linux, Workflows & Reproducibility
san carlos, california, united states
Website:
alkahest.com
Employees:
75
Nathan Watson-Haigh Work Experience Details
  • Alkahest, Inc.
    Associate Director Of Genome Informatics
    Alkahest, Inc. Aug 2022 - Present
    Adelaide, South Australia, Australia
  • Abacbs - Australian Bioinformatics And Computational Biology Society
    Education Sub-Committee
    Abacbs - Australian Bioinformatics And Computational Biology Society Mar 2019 - Present
    Australia
  • Springer Nature
    Associate Editor, Plant Methods
    Springer Nature Jan 2019 - Present
    Providing bioinformatics expertise to the Plant Methods Editorial Board.
  • South Australian Genomics Centre (Sagc)
    Acting Head Of Bioinformatics
    South Australian Genomics Centre (Sagc) Nov 2021 - Jul 2022
  • South Australian Genomics Centre (Sagc)
    Deputy Head Of Bioinformatics
    South Australian Genomics Centre (Sagc) Feb 2021 - Nov 2021
  • South Australian Genomics Centre (Sagc)
    Senior Bioinformatician
    South Australian Genomics Centre (Sagc) Sep 2020 - Oct 2021
    South Australia, Australia
    Bringing plant-focused bioinformatics, genome informatics, and training expertise to the offerings of the newly established South Australian Genomics Centre (SAGC).
  • Genome Informatics & Bioinformatics Training
    Founder
    Genome Informatics & Bioinformatics Training May 2020 - Sep 2020
    Adelaide, South Australia, Australia
    Undertaking consultancy and training activities in the area of genome informatics. My aim is to enable researchers to get their results faster and cheaper and organisation to improve the Resource Use Efficiency (RUE) of their scientific computing infrastructure.
  • University Of Adelaide
    Senior Bioinformatician - Bioinformatics Hub
    University Of Adelaide Oct 2018 - Jun 2020
    North Terrace
    Enhancing the bioinformatics capability of the University of Adelaide through stronger research outcomes for all at the University. Focusing on research activities at the Waite campus.
  • University Of Adelaide
    Scientific Committee For Genomics Data Repository
    University Of Adelaide Nov 2017 - Jan 2019
    Adelaide, Australia
    I sit on the scientific committee for a project funded through the University of Adelaide's Infrastructure Investment Plan (IIP). The project aims to develop a Genomics Data Repository capable of easing the management, analysis and sharing of data. While the focus is for enabling researchers within the Faculty of Health Sciences, the resource is being developed with a wider audience in mind.
  • University Of Adelaide
    Research Fellow In Bioinformatics
    University Of Adelaide Nov 2012 - Oct 2018
    Waite Campus, Adelaide, Australia
    Much of my work involves the analysis of genomic and transcriptomic data from polyploid wheat cultivars with the aim of improving agronomical traits. I am the sysadmin for a large memory Linux machine (64 cores and 512GBytes of RAM) as well as multiple Linux VMs used by the bioinformatics group. I have a passion for open, reusable code, version control and test-driven software development.
  • Australian Bioinformatics Network
    Ngs Bioinformatics Trainer
    Australian Bioinformatics Network Mar 2012 - Dec 2017
    I was among the first cohort of Australian bioinformaticians to be funded to go to the European Bioinformatics Institute (EBI) to learn the skills required to become a hands-on bioinformatics trainer and to develop a Next Generation Sequencing hands-on workshop.During this time I have been instrumental in developing and deploying the NeCTAR Research Cloud based training platform. This platform has enabled the NGS workshop to be run more than 6 times across 5 cities. This approach has… Show more I was among the first cohort of Australian bioinformaticians to be funded to go to the European Bioinformatics Institute (EBI) to learn the skills required to become a hands-on bioinformatics trainer and to develop a Next Generation Sequencing hands-on workshop.During this time I have been instrumental in developing and deploying the NeCTAR Research Cloud based training platform. This platform has enabled the NGS workshop to be run more than 6 times across 5 cities. This approach has proved to be extremely convienient for training purposes, that I have used the same type of setup for the Australian Centre for Ancient DNA (ACAD) Bioinformatics Early Career Researcher Workshop 2012 and 2013 as well as for BioinfoSummer 2012 and 1013. Show less
  • Bioinformatics Interest Group Of South Australia
    President
    Bioinformatics Interest Group Of South Australia Oct 2011 - Dec 2017
    South Australia, Australia
    In collaboration with colleagues, I have formed the Bioinformatics Interest Group of South Australia (BIG SA). BIG SA is a group of cross-organisational bioinformaticians and allied professions from around South Australia (SA).BIG SA aims to provide opportunities for the local research community to engage with its bioinformaticians, for bioinformaticians to engage with each other and provide educational outreach activities. BIG SA strives for an ethos of collaborative teaching, learning… Show more In collaboration with colleagues, I have formed the Bioinformatics Interest Group of South Australia (BIG SA). BIG SA is a group of cross-organisational bioinformaticians and allied professions from around South Australia (SA).BIG SA aims to provide opportunities for the local research community to engage with its bioinformaticians, for bioinformaticians to engage with each other and provide educational outreach activities. BIG SA strives for an ethos of collaborative teaching, learning and cross-mentoring; with an emphasis on interactive workshops for the development of bioinformatics skills within the research community. Show less
  • The Australian Centre For Plant Functional Genomics
    Acpfg Student Management Committee
    The Australian Centre For Plant Functional Genomics Jan 2014 - Dec 2014
    Adelaide, Australia
    The committee:1) Ensures students with the right academic background, skill set, aptitude and motivation are chosen2) Help provide advice about projects offered to students, to ensure projects are realistic and have suitable contingency plans and resources3) Help deal with issues that arise during a student’s project / candidature4) Provide support, advice and feedback to the Education Manager5) Work closely with The University of Adelaide’s Postgraduate coordinators
  • The Australian Wine Research Institute
    Senior Bioinformatician
    The Australian Wine Research Institute Feb 2011 - Nov 2012
    Adelaide, Australia
  • Csiro
    Oce Postdoc
    Csiro May 2008 - Feb 2011
    Queensland, Australia
  • University Of Sheffield
    Postdoc
    University Of Sheffield Feb 2005 - May 2008
    Sheffield, United Kingdom
  • Grosvenor Chemicals Limited
    R&D Assistant
    Grosvenor Chemicals Limited Jul 1999 - Sep 2001
    Linthwaite, West Yorkshire, United Kingdom
    I worked here during the school summer holidays for 2-3 years. I worked in both the R&D and QC labs performing product testing as well as assisting with process development.
  • Bayer
    Assistant Research Scientist
    Bayer Aug 1999 - Jul 2000
    Slough, United Kingdom

Nathan Watson-Haigh Skills

Bioconductor Genome Assembly R Git Systems Biology Snakemake Linux Phylogenetics Openldap Educational Outreach Perl Delivering Workshops Genomics Teaching Transcriptomics Data Analysis Easybuild Bioperl Ansible System Administration Ngs Eclipse Lmod Molecular Biology Latex Bioinformatics Workshop Development Gitlab Training Puppet Ocfs Gnu Make Sequence Analysis Ubuntu Slurm Pipeline Development Genetics Science Network Analysis Cloud Computing High Performance Computing Microarray Analysis Shell Scripting Bash

Nathan Watson-Haigh Education Details

Frequently Asked Questions about Nathan Watson-Haigh

What company does Nathan Watson-Haigh work for?

Nathan Watson-Haigh works for Alkahest, Inc.

What is Nathan Watson-Haigh's role at the current company?

Nathan Watson-Haigh's current role is Associate Director of Genome Informatics at Alkahest | Adelaide, Australia | Linux, Workflows & Reproducibility.

What is Nathan Watson-Haigh's email address?

Nathan Watson-Haigh's email address is na****@****.com.au

What schools did Nathan Watson-Haigh attend?

Nathan Watson-Haigh attended University Of York, University Of Bath.

What skills is Nathan Watson-Haigh known for?

Nathan Watson-Haigh has skills like Bioconductor, Genome Assembly, R, Git, Systems Biology, Snakemake, Linux, Phylogenetics, Openldap, Educational Outreach, Perl, Delivering Workshops.

Who are Nathan Watson-Haigh's colleagues?

Nathan Watson-Haigh's colleagues are Rad Suchecki, Kamran Ahmed, Rick Tearle, Kateryna Borodavchenko, Tibor Nanasi, Annette Tennstaedt, Kim Dang.

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