William Chen Email and Phone Number
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William Chen, Ph.D., is an experienced full-stack software engineer. He has over 20 years experience in both commercial enterprise and in-house software development, involving back-end, front-end, and web application product development. He has the vision and leadership in technology innovation. He has a proven track record in the novel algorithm design, experience in AI, machine Learning and data mining, as well as experience in regulated environment. He has the capability of solving complex, challenging problems, and of learning new technologies quickly. AREAS OF EXPERTICE• Full Stack Software Development (front-end, back-end, Web Application)• Java, Python, C++, C#, HTML, CSS, JavaScript, jQuery, React, Shell scripting• REST and SOAP Web Services• MySQL, PostgreSQL, Oracle, SQL Server• IntelliJ, Eclipse, Visual Studio • Linux, Mac, UNIX, Windows, and Cloud Computing Platforms (e.g., AWS)• Docker/Jenkins, Git & GitHub, SVN, Jira, Confluence, Crucible, Continuous Integration• Scrum and Agile Methodologies • Algorithm Design, AI, Machine Learning & Dada Mining• Lab Automation & LIMS• Bioinformatics & Chemoinformatics
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Senior Software EngineerMemphis Meats Dec 2020 - PresentBerkeley, California, UsFocus on software platform development to help accelerate the cultivated meat revolution.
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Senior Staff EngineerPendulum Therapeutics Apr 2019 - Jun 2020San Francisco, California, UsHelp building scalable, more reliable Discovery Platform based on AWS and Google Cloud Platform. -
Principal Software EngineerSynthetic Genomics Jan 2018 - Jan 2019La Jolla, Ca, UsLead the development of a variety of LIMS Plugins based on microservice architecture with the web client implemented in React.js.Developed Nextflow-based Bioinformatics pipeline. -
Lead Consultant, Lims And Software DevelopmentSynthetic Genomics 2017 - Jan 2018La Jolla, Ca, UsDesigned and developed a new REST web service.Developing new custom web user interfaces to overcome the limitations of the commercial LIMS.Developing methods for integration of cloud–based LIMS with other cloud-based systems, e.g. Bioinformatics pipelines.
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Staff Software EngineerIllumina Dec 2015 - 2017San Diego, Ca, UsResponsible for designing and developing lab automation, and cloud-based as well as on-premises software solutions and tools for managing, processing, and interpreting genomic data. -
Staff Software EngineerGuardant Health Dec 2013 - Dec 2015Palo Alto, California, Us -
Senior Software EngineerGuardant Health Dec 2013 - Aug 2014Palo Alto, California, UsVery first software engineer hired by Guardant Health, a fast growing startup, to establish the software development team and develop the various software solutions to support the company's oncology business (liquid biopsy cancer test).
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Senior Software Developer, BioinformaticsThermo Fisher Scientific Jun 2013 - Nov 2013Waltham, Ma, UsResponsible for design and development of in-house software systems to support DNA typing technology development of the Transplant Diagnostics business. In particular, significantly improved the performance of the Sequence Tool. -
Co-Founder And Head Of Web DevelopmentOrojin.Com Mar 2013 - Jun 2013Conceived and designed the Orojin.com Website, and lead its development.Orojin is a free service. It allows users to create home pages in such a way that their most frequently visited websites are just one-click away. The user can access them from anywhere, anytime using any Web browser and any device. Orojin's front-end was implemented using HTML 5 and jQuery and its back end was written in PHP, backed by MySQL.
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Principal Software Development ScientistAccelrys Jul 2010 - Mar 2013San Diego, Ca, UsA member of Accelrys’ Chemistry Foundation Group. Conducted R&D of core cheminformatics/bioinformatics technologies and software products, such as Accelrys Pipeline Pilot, Accelrys Direct, and Accelrys Draw. In particular,Introduced a new concept of "Markush SCSR" for better representation of more complex biomacromolecular systems, such as Antibody-Drug Conjugate (ADC).Played a significant role in implementation of Self-Contained Sequence Representation (SCSR) in Pipeline Pilot; developed SCSR-based Pipeline Pilot components and protocols for integration of Pipeline Pilot with Accelrys Direct, Accelrys Draw, and Accelrys Discovery Studio, etc. Introduced a new ring set called the Unique Set of Smallest Rings (USSS). Significantly improved the accuracy of aromaticity perception method in Pipeline Pilot.Significantly enhanced the Sequence Tool of Accelrys Draw 4.1 release: re-designed and enhanced Create Chain and Edit Chain tools, designed and implemented several new features, such as Sense/Antisense Sequence Conversion, Make Opposite Sense Sequence.Proposed and developed new methods for full support of stereochemistry perception and NEMA key generation of complex stereochemical geometries, such as trigonal bipyramidals and square pyramidals.Enhanced and maintained Java-based Cheshire Web Services, which is used by Accelrys DiscoveryGate (DiscoveryGate.com), a powerful, easy-to-use application for accessing a wealth of scientific information through the Web. -
Principal Software Development ScientistSymyx Technologies, Inc. Oct 2007 - Jul 2010UsA member of Symyx’s core Chemical Representation Group (CHRP). Conducted R&D of core cheminformatics/bioinformatics technologies and software products. In particular, Played a leading role in designing and building a suite of next generation products (Symyx Direct Oracle Data Cartridge, Symyx Draw, and Symyx Cheshire - a chemistry oriented computer language) for handling, storing, and retrieving biomolecular sequences based on the Self-Contained Sequence Representation (SCSR), which he introduced in 2005.Proposed, designed, and implemented two new technologies - the Tgroup NEMA key and Sequence NEMA key for handling biomolecular sequences. The Sequence NEMA key overcomes the limitation of fragment-based screening method for exact structure search and makes it possible to perform fast exact sequence search at the chemistry level. -
Advisory Scientist/Principal Software Development ScientistReed Elsevier (Elsevier Mdl) Jan 2000 - Oct 2007A member of the Elsevier MDL ‘s core Chemical Representation Group (CHRP). Conducted R&D of core cheminformatics/bioinformatics technologies and software products. In particular, Introduced a new concept of Reaction Hyper Structure (RHS) and carried out the research on building a novel reaction graph indexing and searching technology based on RHS.Developed the star-atom (*atom) representation of biomolecular sequence to eliminate the limitation of MDL’s ptable (periodical table), and implemented it in MDL Draw in C#. Proposed and designed XML-based standard-abbreviation-definition file for configuring of Sequence Tool of MDL Draw. This makes it easier for end users to choose among four different biopolymer representations – full connection table, pseudoatom, star-atom, and pseudoatom plus star-atom representations.Recognized the inherent problems of existing biomolecular sequence representations, and introduced a novel sequence representation - “Self-Contained Sequence Representation (SCSR)”, which later became the foundation of the next-generation products for handling, indexing, storing, and searching biopolymers at the chemistry level, and for the integration of bioinformatics with cheminformatics solutions. Designed and developed the NEMA algorithms for stereochemistry perception and NEMA key for fast exact structure search and duplicate checking.
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Senior Scientific ProgrammerMdl Information Systems, Inc. Jan 1997 - Dec 1999A member of MDL’s core Chemical Representation Group (CHRP). Conducted R&D of core cheminformatics technologies and software products. In particular, enhanced the reaction screening keys; proposed and developed a new reaction substructure search (RSS) algorithm, and designed and implemented the RSS library using C++. RSS is the key reaction searching method for MDL’s flagship enterprise product – MDL Direct Oracle Data Cartridge.
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Research FellowBrandeis University 1995 - 1996Waltham, Ma, UsTake charge of the development of the computer-assisted organic synthesis design system - SYNGEN project (with Prof. James B. Hendrickson). -
Research Fellow Of The Alexander Von Humboldt-FoundationComputer-Chemistry-Center, University Of Erlangen-Nuernberg 1993 - 1995Explored the new research area of applying neural network application to automatic extraction of chemical knowledge from reaction database (with Prof. Johann Gasteiger).
William Chen Skills
William Chen Education Details
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University Of Vienna, AustriaOrganic Chemistry/Cheminformatics -
University Of Science And Technology Of China, ChinaAnalytical Chemistry/Computer Chemistry
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Experimental Center, Zhejiang University, Hangzhou, ChinaIr)
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University Of Broadcast & Television Of Zhejiang, Zhejiang, ChinaElectronics
Frequently Asked Questions about William Chen
What company does William Chen work for?
William Chen works for Memphis Meats
What is William Chen's role at the current company?
William Chen's current role is Senior Software Engineer at Upside Foods (formerly Memphis Meats).
What is William Chen's email address?
William Chen's email address is wi****@****rys.com
What is William Chen's direct phone number?
William Chen's direct phone number is +165029*****
What schools did William Chen attend?
William Chen attended University Of Vienna, Austria, University Of Science And Technology Of China, China, Experimental Center, Zhejiang University, Hangzhou, China, University Of Broadcast & Television Of Zhejiang, Zhejiang, China.
What skills is William Chen known for?
William Chen has skills like Software Development, Cheminformatics, Bioinformatics, Data Mining, Databases, Computational Chemistry, Agile Methodologies, Organic Chemistry, Algorithms, Web Services, C++, Software Engineering.
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