Sean (Xiang) Yao Email & Phone Number

San Diego, California, US

• Consulting biotech and pharma companies on R&D tt https://insilico-biosystems.com/. Example consulting projects:
• Drug discovery project review and portfolio optimization, for a company working on multiple disease areas and modalities.
• NGS data management, analysis, and integration of internal and external samples; Systematic mining and assessment of tumor-associated antigens as ADC targets, for a company focusing on Oncology.
• Target and off-target safety assessment for preclinical projects and lifting clinical hold, for a biopharma on pediatric diseases.
• Revised bioinformatics software and database for AI/ML analytics, for a biotech software company.
• Advising VC firms and others on technology and portfolio evaluation and strategies of AI-driven and other biotech companies.

Raritan, New Jersey, US

• Built new team and developed team strategy and goals. Led team on computational predictive and investigative assessment of targets and compounds in all J&J disease areas and modalities. Led innovation projects in.
• Revamped toxicogenomics and multi-omics operation by aligning process flow, technology platform, data analysis and communication with project stages. Transformed it to drive impact on decision-making in stage.
• Established computational analysis workflow for a) siRNA modality from target transcript validation to IND submission, b) optimization of bi- and tri-specific antibody for maximizing on-tumor binding and minimizing.
• Built/Tested/Implemented toxicity AI/ML models for compound lead selection
• Created Target Safety Assessment (TSA) workflows for all targets, addressing different needs among modalities and evolving needs with project stages. TSA became a required component in portfolio entry and pre-clinical.
• Instituted Off-Target Prediction & Identification (OTPI) and Off-Target Safety Assessment (OTSA) workflows for multiple modalities, significantly improved compound safety assessment in lead selection, issue resolution.

Raritan, New Jersey, US

• Established team G&Os. Led fund raising for joint projects. led team in building analytical tools and knowledge bases, to support drug discovery projects across therapeutic areas and modalities. Directed computational.
• Expanded BodyMap project by generating new RNA-Seq data of nonclinical species and integrating internal and external disease data fro. BodyMap became an essential resource for target discovery and safety assessment of.
• Integrated and mined public data of human postmortem brain data for neuroscience disease pathways and targets. Mined TCGA data for oncology biomarkers and targets. Both contributed to new projects in Neurosciences and.
• Developed computational workflow for phenotypical screening-based compound lead and target ID for immune diseases.
• Analyzed various data in Immunology disease target/biomarker identification, disease classification, treatment response prediction. Developed in-vitro disease and assay models for screening IBD compounds.
• Streamlined NGS and other big data exchange, data flow and user access. Improved efficiency and reduced costs by developing tiered data management infrastructure based on data volume, value, user access and regulatory.

Raritan, New Jersey, US

• Built new team. Managed internal and external collaboration, licensing and outsourcing. Contributed to mission and strategies and identified opportunities for new organization. Built foundation for broad data catalog.
• Integrated Electronic Medical Records (EMR) and omics data in Immunology diseases. Mined data for biomarker identification, disease classification and progression prediction.
• Led building J&J’s NGS infrastructure and analysis pipeline in the San Diego Supercomputer Center (SDSC).
• Established collective mechanism for funding global resources by obtaining backing from multiple organizations for enterprise software licensing and internal and external data integration expansion.

Raritan, New Jersey, US

• Strategized and implemented team goals. Led internal infrastructure, knowledgebase, and analytic tools development for global R&D through collaboration across multifunctional teams. Led bioinformatics tool and database.
• Established Janssen BodyMap: omics and genomics database for cells and organ tissues from human and nonclinical species under normal and disease conditions, with more than 10K internal and external studies.
• Enhanced workflow for NGS data management and computing utilizing distributed in-house servers.
• Improved system for HCI (High Content Imaging) profiling of compound library by cellular gene expression and morphology.
• Migrated infrastructure from in-house to SDSC and Amazon Cloud.
• Implemented LIMS for tracking and automation of Genomic Core operations.Managed data analytics efforts in cross-functional matrix teams for study design, data collection, systematic analysis and hypothesis generation /.

New Brunswick, NJ, US

• Led evaluation, design and implementation of global bioinformatics and other informatics solutions essential for drug discovery. Provided data analytics to R&D teams across therapeutic areas. Supported global.
• DNAchip: A system for study request fulfillment, LIMS, data management and analysis of in-house microarray operations.
• Hydra: A system that downloads, extracts, transforms and integrates bioinformatics data from >80 external sources. Became the backbone of Janssen informatics systems for target identification and annotation.
• Advanced Biological & Chemical Discovery (ABCD): A system for in-house compound bioactivity assays, having study design, assay request/approval, LIMS, Data integration/aggregation, and analysis modules.
• ToxGen: Data management and analysis pipeline of rat liver gene expression data treated with compendium of toxic compounds, for identifying toxicity biomarkers and developing biomarker panel for toxicity prediction.Ran.

Phd, Molecular Biology

Ms, Computer Engineering

Bs, Biochemistry