Yu-Chen (Janet) Pan

Yu-Chen (Janet) Pan Email and Phone Number

Bioinformatics | Genetics @ SOPHiA GENETICS
saint-sulpice-des-rivoires, rhone-alpes, france
Yu-Chen (Janet) Pan's Location
United States, United States
Yu-Chen (Janet) Pan's Contact Details

Yu-Chen (Janet) Pan work email

Yu-Chen (Janet) Pan personal email

n/a
About Yu-Chen (Janet) Pan

Motivated graduate student with 2+ years of working experience in genetic and bioinformatics analysis, passionate about software development for reproducible data analyses, pipeline automation, and data engineering. Enthusiastic about machine learning model pipeline development

Yu-Chen (Janet) Pan's Current Company Details
SOPHiA GENETICS

Sophia Genetics

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Bioinformatics | Genetics
saint-sulpice-des-rivoires, rhone-alpes, france
Employees:
362
Yu-Chen (Janet) Pan Work Experience Details
  • Sophia Genetics
    Bioinformatician
    Sophia Genetics Aug 2024 - Present
  • University Of Washington
    Graduate Student Research Assistant
    University Of Washington Sep 2022 - Jun 2024
    • Collaborated and developed a pipeline for extracting somatic and germline variants from high throughput single cell data (sciATAC-seq) in Drosophila melanogaster and human fetal embryos (HPCC, Linux, Snakemake, R)• Designed the application of quality control analyses from the extracted variants • Conducted mutational signature analysis, comparing results with the Catalogue of Somatic Mutations in Cancer (COSMIC) to explore mutagenesis mechanisms and rates across tissues during development (R, Python)
  • Center For Human Genetics
    Research Technician
    Center For Human Genetics Feb 2021 - Aug 2022
    • Led PrecisionTox project: - Performed extreme QTL mapping (xQTL) experiments to explore candidate arsenic resistance variants in Drosophila melanogaster using NGS DNA sequencing (Illumina) - Conducted NGS sequencing analyses to identify significant alleles contributing to arsenic resistance (HPCC, Linux, Cytoscape)• Automated and optimized and pipeline of preprocessing large-scale raw data from Drosophila Activity Monitor assay (Python, Git/GitHub)• Led and collaborated with a team in conducting acute chemical exposure pilot screens using the Drosophila Genetic Reference Panel (DGRP); Statistically analyzed (SAS, R) and visualized the results (R)• Mentored undergraduate interns for Undergraduate Research Symposium
  • University Of Washington
    The Promislow Lab- Lab Assistant
    University Of Washington Sep 2019 - Feb 2022
    • Performed lifespan development experiment to identify novel interventions that extend longevity in ND2 Drosophila melanogaster Leigh syndrome fruit fly• Assisted screening of ~200 DGRP lines to investigate genetic variation in the development times in response to rapamycin
  • University Of Washington
    The Kaeberlein Lab- Lab Assistant
    University Of Washington Jan 2019 - Aug 2019
    • Led a project which examined mitophagy of NDUFS mice under rapamycin treatments • Worked with the mouse team to collect mice tissues and extract brain proteins and DNA • Western blotted proteins from CST Mitochondrial Dynamics Antibody Sampler Kit, analyzed concentration through imageJ, interpreted the data and the results showed rapamycin reduces mitochondria fission

Yu-Chen (Janet) Pan Education Details

Frequently Asked Questions about Yu-Chen (Janet) Pan

What company does Yu-Chen (Janet) Pan work for?

Yu-Chen (Janet) Pan works for Sophia Genetics

What is Yu-Chen (Janet) Pan's role at the current company?

Yu-Chen (Janet) Pan's current role is Bioinformatics | Genetics.

What is Yu-Chen (Janet) Pan's email address?

Yu-Chen (Janet) Pan's email address is pa****@****ton.edu

What schools did Yu-Chen (Janet) Pan attend?

Yu-Chen (Janet) Pan attended University Of Washington, University Of Washington, North Carolina State University.

Who are Yu-Chen (Janet) Pan's colleagues?

Yu-Chen (Janet) Pan's colleagues are Camille Balligand-Chambard, Tiago Pinto Rodrigues, Ilaria Scarabottolo, Patxi Gascue, Giovanni Velotta, Mariela Alarcón, Martin Fritzsche.

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