Yu-Chen (Janet) Pan Email and Phone Number
Yu-Chen (Janet) Pan work email
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Yu-Chen (Janet) Pan personal email
Motivated graduate student with 2+ years of working experience in genetic and bioinformatics analysis, passionate about software development for reproducible data analyses, pipeline automation, and data engineering. Enthusiastic about machine learning model pipeline development
Sophia Genetics
View- Website:
- sophiagenetics.com
- Employees:
- 362
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BioinformaticianSophia Genetics Aug 2024 - Present -
Graduate Student Research AssistantUniversity Of Washington Sep 2022 - Jun 2024• Collaborated and developed a pipeline for extracting somatic and germline variants from high throughput single cell data (sciATAC-seq) in Drosophila melanogaster and human fetal embryos (HPCC, Linux, Snakemake, R)• Designed the application of quality control analyses from the extracted variants • Conducted mutational signature analysis, comparing results with the Catalogue of Somatic Mutations in Cancer (COSMIC) to explore mutagenesis mechanisms and rates across tissues during development (R, Python) -
Research TechnicianCenter For Human Genetics Feb 2021 - Aug 2022• Led PrecisionTox project: - Performed extreme QTL mapping (xQTL) experiments to explore candidate arsenic resistance variants in Drosophila melanogaster using NGS DNA sequencing (Illumina) - Conducted NGS sequencing analyses to identify significant alleles contributing to arsenic resistance (HPCC, Linux, Cytoscape)• Automated and optimized and pipeline of preprocessing large-scale raw data from Drosophila Activity Monitor assay (Python, Git/GitHub)• Led and collaborated with a team in conducting acute chemical exposure pilot screens using the Drosophila Genetic Reference Panel (DGRP); Statistically analyzed (SAS, R) and visualized the results (R)• Mentored undergraduate interns for Undergraduate Research Symposium
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The Promislow Lab- Lab AssistantUniversity Of Washington Sep 2019 - Feb 2022• Performed lifespan development experiment to identify novel interventions that extend longevity in ND2 Drosophila melanogaster Leigh syndrome fruit fly• Assisted screening of ~200 DGRP lines to investigate genetic variation in the development times in response to rapamycin -
The Kaeberlein Lab- Lab AssistantUniversity Of Washington Jan 2019 - Aug 2019• Led a project which examined mitophagy of NDUFS mice under rapamycin treatments • Worked with the mouse team to collect mice tissues and extract brain proteins and DNA • Western blotted proteins from CST Mitochondrial Dynamics Antibody Sampler Kit, analyzed concentration through imageJ, interpreted the data and the results showed rapamycin reduces mitochondria fission
Yu-Chen (Janet) Pan Education Details
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Genetics -
Biochemistry
Frequently Asked Questions about Yu-Chen (Janet) Pan
What company does Yu-Chen (Janet) Pan work for?
Yu-Chen (Janet) Pan works for Sophia Genetics
What is Yu-Chen (Janet) Pan's role at the current company?
Yu-Chen (Janet) Pan's current role is Bioinformatics | Genetics.
What is Yu-Chen (Janet) Pan's email address?
Yu-Chen (Janet) Pan's email address is pa****@****ton.edu
What schools did Yu-Chen (Janet) Pan attend?
Yu-Chen (Janet) Pan attended University Of Washington, University Of Washington, North Carolina State University.
Who are Yu-Chen (Janet) Pan's colleagues?
Yu-Chen (Janet) Pan's colleagues are Camille Balligand-Chambard, Tiago Pinto Rodrigues, Ilaria Scarabottolo, Patxi Gascue, Giovanni Velotta, Mariela Alarcón, Martin Fritzsche.
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