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Algorithms and tools for data-driven omics integration to achieve multilayer biological insights: a narrative review Journal of Translational Medicine

A single-cell multi-omics atlas of rice Nature

Integration of multi-omics data accelerates molecular analysis of common wheat traits Nature

FDA Omics Days 2024 09/12/2024 fda.gov

High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue ScienceDirect.com

SMOPCA: spatially aware dimension reduction integrating multi-omics improves the efficiency of spatial domain detection Genome Biology

Nonlinear dynamics of multi-omics profiles during human aging Nature

Integration of pan-omics technologies and three-dimensional in vitro tumor models: an approach toward drug discovery and precision medicine Molecular Cancer

Space Omics and Medical Atlas (SOMA) across orbits Nature

Resolving tissue complexity by multimodal spatial omics modeling with MISO Nature

The Space Omics and Medical Atlas (SOMA) and international astronaut biobank Nature

Unifying multi-sample network inference from prior knowledge and omics data with CORNETO Nature

scGPT: toward building a foundation model for single-cell multi-omics using generative AI Nature

Spatial multi-omics reveals cell-type-specific nuclear compartments Nature

A visual–omics foundation model to bridge histopathology with spatial transcriptomics Nature

Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond Nature

Single-cell multi-omics map of human fetal blood in Down syndrome Nature

Squidpy: a scalable framework for spatial omics analysis Nature

Transformers in single-cell omics: a review and new perspectives Nature

AI-driven multi-omics modeling of myalgic encephalomyelitis/chronic fatigue syndrome Nature

A second space age spanning omics, platforms and medicine across orbits Nature

Sopa: a technology-invariant pipeline for analyses of image-based spatial omics Nature

Multi-omics-based mapping of decidualization resistance in patients with a history of severe preeclampsia Nature

A multi-omics approach identifies the key role of disorders of sphingolipid metabolism in Ang II-induced hypertensive cardiomyopathy myocardial remodeling Nature

Integration strategies of multi-omics data for machine learning analysis ScienceDirect.com

Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models Nature

Genetic imputation of kidney transcriptome, proteome and multi-omics illuminates new blood pressure and hypertension targets Nature

Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria Nature

Gene regulatory network inference in the era of single-cell multi-omics Nature

The technological landscape and applications of single-cell multi-omics Nature

Multi-omics microsampling for the profiling of lifestyle-associated changes in health Nature

Single-cell multi-omics in the medicinal plant Catharanthus roseus Nature

Integrative cross-omics and cross-context analysis elucidates molecular links underlying genetic effects on complex traits Nature

Measuring biological age using omics data Nature

Spatial omics technologies at multimodal and single cell/subcellular level Genome Biology

Methods and applications for single-cell and spatial multi-omics Nature

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity Nature

Introducing Amazon Omics – A Purpose-Built Service to Store, Query, and Analyze Genomic and Biological Data at Scale Amazon Web Services

Multi-omics analysis reveals niche and fitness differences in typical denitrification microbial aggregations ScienceDirect.com

Integrated multi-omics for rapid rare disease diagnosis on a national scale Nature

Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis Nature

Multi-omics single-cell data integration and regulatory inference with graph-linked embedding Nature

SpatialData: an open and universal data framework for spatial omics Nature

Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women Nature

MOGONET integrates multi-omics data using graph convolutional networks allowing patient classification and biomarker identification Nature

Single-cell multi-omics analysis of the immune response in COVID-19 Nature

Spatial omics and multiplexed imaging to explore cancer biology Nature

Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19 ScienceDirect.com

An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer Nature

An integrated organoid omics map extends modeling potential of kidney disease Nature

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases Nature

MiBiOmics: an interactive web application for multi-omics data exploration and integration BMC Bioinformatics

Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer Nature

Longitudinal multi-omics of host–microbe dynamics in prediabetes Nature

Meta-omics analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism Nature

Community-led, integrated, reproducible multi-omics with anvi’o Nature

The Perseus computational platform for comprehensive analysis of (prote)omics data Nature

Integrated multi-omics analysis of oligodendroglial tumours identifies three subgroups of 1p/19q co-deleted gliomas Nature