LCN Bioinformatics, LLC

LCN Bioinformatics is dedicated to implementing the most innovative bioinformatic approaches for your analysis needs. I provide a range of academic and corporate services to help accelerate the scientific discovery process for both model and non-model systems. These are examples of my services. These lists are not comprehensive. Transcriptomics: RNA-Seq data quality assessment and pre-processing De novo and reference guided transcriptome assembly Read alignment to reference sequence, genome, transcriptome, exome, etc Transcript abundance enumeration Differential expression analysis Variant detection Co-expression network analysis, hub gene detection and visualization Gene expression-meta data correlation analysis Gene annotation and analyses: Sequence annotation using a variety of data bases such as NCBI and TAIR10 Functional annotation using various approaches such as Gene Ontology and Map Man Biochemical pathway analysis using a variety data bases such as KEGG and Reactome Gene set enrichment analysis Over-representation analysis Statistical analyses: Survival analysis Principal component analysis ANOVA Regression analysis Hypothesis testing Coding: Bash and Unix command line R and python Debugging Production of publication quality figures Other services: Manuscript review for publications, including help with reviewer comments Educational materials and scripts for any service offered Virtual training for any services offered Free post-project support 25% academic discount for customers who agree to be a public reference and to acknowledge my services in ensuing research articles (authorship not required)