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Editorial: District Silence Following SEQ Email Scams is Costing Students…Literally M-A Chronicle

Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq ScienceDirect.com

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification Nature

MORE-RNAseq: a pipeline for quantifying retrotransposition-capable LINE1 expression based on RNA-seq data Frontiers

Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis Science | AAAS

Mutant resources for functional genomics in Dictyostelium discoideum using REMI-seq technology BMC Biology

Mime-seq 2.0: a method to sequence microRNAs from specific mouse cell types EMBO Press

Detection of differentially abundant cell subpopulations in scRNA-seq data PNAS

High-throughput total RNA sequencing in single cells using VASA-seq Nature

Single-Cell RNA-Seq Technologies and Related Computational Data Analysis Frontiers

Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus Science | AAAS

Current best practices in single‐cell RNA‐seq analysis: a tutorial | Molecular Systems Biology EMBO Press

Assessing GPT-4 for cell type annotation in single-cell RNA-seq analysis Nature

nucMACC: An MNase-seq pipeline to identify structurally altered nucleosomes in the genome Science | AAAS

Path‐seq identifies an essential mycolate remodeling program for mycobacterial host adaptation EMBO Press

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis Science | AAAS

Mapping medically relevant RNA isoform diversity in the aged human frontal cortex with deep long-read RNA-seq Nature

Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration Science | AAAS

Functional analysis of structural variants in single cells using Strand-seq Nature

Single-cell massively-parallel multiplexed microbial sequencing (M3-seq) identifies rare bacterial populations and profiles phage infection Nature

SCSA: A Cell Type Annotation Tool for Single-Cell RNA-seq Data Frontiers

LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding Nature

CiBER-seq dissects genetic networks by quantitative CRISPRi profiling of expression phenotypes Science | AAAS

RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types ScienceDirect.com

CIGAR‐seq, a CRISPR/Cas‐based method for unbiased screening of novel mRNA modification regulators EMBO Press

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression Genome Biology

High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq Nature

Fast and highly sensitive full-length single-cell RNA sequencing using FLASH-seq Nature

De novo gene signature identification from single‐cell RNA ‐seq with hierarchical Poisson factorization EMBO Press

SUGAR-seq enables simultaneous detection of glycans, epitopes, and the transcriptome in single cells Science | AAAS

Droplet-based mRNA sequencing of fixed and permeabilized cells by CLInt-seq allows for antigen-specific TCR cloning PNAS

Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types Science | AAAS

Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference Genome Biology

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data Genome Biology

Decontamination of ambient RNA in single-cell RNA-seq with DecontX Genome Biology

ATAC-Seq Reveals an Isl1 Enhancer That Regulates Sinoatrial Node Development and Function | Circulation Research American Heart Association Journals

Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq Science | AAAS

RNA-seq data science: From raw data to effective interpretation Frontiers

RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species Frontiers

Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model Genome Biology

PEARL-seq: A Photoaffinity Platform for the Analysis of Small Molecule-RNA Interactions ACS Publications

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells Nature

Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks Nature

Tomo-Seq Identifies SOX9 as a Key Regulator of Cardiac Fibrosis During Ischemic Injury | Circulation American Heart Association Journals

TT‐seq captures enhancer landscapes immediately after T‐cell stimulation EMBO Press

Normalization Methods on Single-Cell RNA-seq Data: An Empirical Survey Frontiers

High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes Nature

BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction Frontiers

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq Science | AAAS