Audrey Dubost Email & Phone Number

Plan-Les-Ouates, Ge, Ch

Plan-Les-Ouates, Genève, Suisse

- Support the analysis and reporting of CLD for Selexis/KBI clients- Development of analysis pipeline for JLS companies (including Selexis, KBI and CrownBiosciences) or NGS-AI R&D- Downstream R analysis (including WGCNA and Mefisto) Package and use programs in Docker containers , develop and organize analysis in Nextflow framework (DSL and DSL2).Working on kubernetes cluster.Sequencing technologies: Illumina NovaSeq, MGI, Pacbio (DNA, Isoseq)Optical mapping… Show more - Support the analysis and reporting of CLD for Selexis/KBI clients- Development of analysis pipeline for JLS companies (including Selexis, KBI and CrownBiosciences) or NGS-AI R&D- Downstream R analysis (including WGCNA and Mefisto) Package and use programs in Docker containers , develop and organize analysis in Nextflow framework (DSL and DSL2).Working on kubernetes cluster.Sequencing technologies: Illumina NovaSeq, MGI, Pacbio (DNA, Isoseq)Optical mapping technologie: BionanoKey words:#WGS / WTS#Cell line#Gitlab#Nextflow DSL & DSL2#R analysis#Docker Show less

Région De Villeurbanne, France

As bioinformatician on an analysis plateform, i focused my activities on: - Communities : metabarcoding on functional genes and rrs - Bacterial Genome assemblies - Transcriptomic - Metagenomic - Metatranscriptomic - Variant calling between bacterial strain - Create and maintain MySQL databases Development of pipeline to analyse different kind of analyses Support, advice and training of unit staff in data… Show more As bioinformatician on an analysis plateform, i focused my activities on: - Communities : metabarcoding on functional genes and rrs - Bacterial Genome assemblies - Transcriptomic - Metagenomic - Metatranscriptomic - Variant calling between bacterial strain - Create and maintain MySQL databases Development of pipeline to analyse different kind of analyses Support, advice and training of unit staff in data processing Field activity during specific projects: Lascaux cave, Aven Orgnac. Technical supervision of trainees (from license to Master 2) and doctoral students. Autonomy in the organization, prioritization and realization of projects.Unit Health and Safety Coordinator: Health assistant since 2013 Coordinator of the internal network since 2013: 6 assistants and one H&S correspondent - Application of the supervisory security policy (4) within the multi-site unit (5 buildings, 3 campuses) - Drafting of the Single Risk Assessment Document - Dissemination of information, good practices and recommendations of the supervisory authorities - Keeping of safety registers - Waste management - Welcoming new entrants - Declarations of accidents - GMO approval requests - Privileged interlocutor with the HS services of the supervisory authorities, CRHSCTRepresentative elected to the Laboratory Council (to represent technicians and engineers)First aid worker and Evacuation safety managerJury member in Internal and external CNRS competition , BAP A Life Sciences - Biology Show less

Région De Lyon, France

Teacher in bioinformatic training- Utilisation & application of bioinformatic Module which contain course and tutorials

Work on wheat genomePipeline development in Perl to annotate BAC, detection and vizualisation of transposable elements

Sophia-Antipolis, France

Transcriptomic analysis on DNA chips from patients with dermatologic damages like psoriasis,atopic dermatitis, rosacea etcIdentification of pathways of interest

Master'S Degree Bbsg, Genomique Et Bioinformatique

Licence, Génétique