Daniel Gomez Email and Phone Number
Daniel J. Gomez, an experienced computational and molecular biologist, renowned for academic success and groundbreaking research on interdisciplinary research teams in neurological sciences, neurosurgery, anesthesia, physiological sciences, pathology and genetics. Passionate about encoding and decoding biological complexities, he dedicates his career to precision medicine through theoretical, experimental, and computational sciences. In his graduate studies, Daniel trained and studied in cell and biology, biotechnology, structural biology, bioengineering, and chemical and systems biology, focusing on computational techniques to investigate biomolecules' three-dimensional structures and functions. He found that through computation and his comprehensive background that spatial multiomics matched with his speciality/experience leveraging cutting-edge technologies to solve complex diseases within biological tissues. Meticulous analysis and innovative computational approaches contributed to advancing the understanding of the spatial heterogeneity and multi-layered regulatory networks that dictate cellular behavior and fate within their native microenvironments.In Year two, he recognized the value of biomedical data science and power of next-generation computational tools. He narrowed his research focus on computational genetics and genomics, spatial single cell bioinformatics, excelling in biological data analysis. He explores multi-view advanced integrative multi-omics, single-cell data, spatial datasets, and bioinformatics/biostatistics such as graphical clustering and algorithm development expanding cellular diversity and tissue architecture organization. Daniel aspires to be a leader in academia, government, and industry with solutions in translation medicine, clinical bioinformatics, biomedical science research, data science engineering, improving patient outcomes, and healthcare innovation. He continues to research multiomics, spatial single-cell biology and computational science AL/ML precision medicine frontiers, poised to make profound contributions as a computational biologist, research associate, bioinformatician/computational data scientist, shaping medicine's future and advancing biological understanding. His dedication exemplifies scientific and technology intrinsic value, inquiry and innovation.
Stanford University School Of Medicine
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Graduate Research Student In GeneticsStanford University School Of Medicine Aug 2023 - PresentPalo Alto, California, United StatesLaboratory of Michael Snyder, Stanford Genome Technology Center Department of Genetics, Stanford University School of Medicine -
Research Assistant InternStanford Genetics Jun 2024 - Aug 2024United StatesGrantmanship training, Spatial Genomics, Integrative Multiomics Analysis, MRI Neuroimaging, Computational Pathology (WSI, Histology Imaging)Laboratory of Michael Snyder, Stanford Genome Technology Center Department of Genetics, Stanford University School of Medicine -
Neuroimaging AssistantStanford Neurosurgery Jul 2023 - Mar 2024Stanford, California, United StatesRat ischemic stroke Brain stem cell transplant model neuroimaging and spatial single-cell data analysisUnder the direction of Dr. Pardes Habib, PhD in Gary Steinberg's Lab -
Graduate Research StudentStanford Cancer Institute Apr 2023 - Aug 2023United StatesProtein Biochemistry, Structural Biology, Chemical and Systems Biology- helpful discussions in structural biology (XRD, CryoEM, computational and experimental) and image processing- Stock lab with nanobiotechnology protein bioconjugation tools - Literature review and write summaries of GATOR1/2, mTORC1/2, Rag-Ragulator, TSC1/2- Assist with material, chemical, and reagent production, organization, and storage- Scaling up protein harvests (protein production from genome-engineered cells and selected plasmids, broth medium, and pellet formation of cells/protein(s))- Protein purification by column chromatography (affinity)- Dialysis of purified proteins- Bradford assays for protein concentration and data analysis (PRISM)- SDS-PAGE Gel Electrophoresis and Image annotation- Interview and score post-doctoral candidates for Associate/Fellowship positions- Give information on local and global Cryo-EM resources, observe and raise awareness to these global community capabilities -
Scientific Researcher, UserSlac National Accelerator Laboratory Jun 2022 - Apr 2023Menlo Park, California, United States2022 SSRL/LCLS User's Meeting 2023 RapiData at SSRL2023 Image Processing Workshop -
Visiting ResearcherStanford Synchrotron Radiation Lightsource May 2022 - Apr 2023Menlo Park, California, United StatesExperimental and Computational methods2022 Safety and Security Fair at SSRL 2023 SSRL Turns 50Structural Molecular Biology (SMB) DivisionMacromolecular Crystallography (MC) group at SSRLBeamlines (BL12-2, BL12-1)It is optimized for microdiffraction, monochromatic, high-throughput and high-resolution macromolecular crystallography.Stanford-SLAC Cryo-EM Center (S2C2), Electron Microscopy-XCryoEM and BioImaging Division, SSRL, SLAC National Accelerator LaboratoryStanford University for U.S. Department of Energy (DOE) -
Virtual Associate FellowDrexel University College Of Medicine Jul 2022 - Feb 2023Publication Project "Co-infection and cancer: host-pathogen interactions between dendritic cells, HIV-1, HTLV-1, and oncogenic viruses"Institute for Molecular Medicine & Infectious Disease- Neuropathogenesis of HIV-1, HTLV-1- dendritic cells (DCs)- cancer immunology/immuno-oncology (IO)- infection and cancer in oncogenic viruses (EBV, HBV, HDV, HCV, HPV) and their interactions with DCs- Vaccines and Therapeutics (HIV, HTLV, HPV)- neuroinflammatory diseases, esp. those associated with chronic infection(s) such as HAND, HAM/TSP, neuroAIDS, etc. - combined blockade (antiretrovirals, antivirals) as a potential immunotherapeutic strategy to restore immune cell functions- coinfections (HIV/HTLV, HIV/EBV, HTLV/EBV) and cancer (DLBCL, GBM, PCNSL, CHL, BL, Oropharyngeal cancer, nasopharyngeal carcinoma)Poster Projects+ 12th Annual AACR-JCA Joint Conference Abstract accepted for poster presentation (Honolulu, HI) + 22nd Microbiology UC Berkeley Student Symposium (Berkeley, CA) [Poster Presentation]Laboratory of Pooja Jain -
Teaching AssociateCalifornia State University - East Bay Aug 2022 - Jan 2023Hayward, California, United States*Teaching the Lab Section of "Clinical Microbiology" (BIO230)Introduction to beneficial and harmful microorganisms that interact with humans. Basic laboratory practice in handling microorganisms, including techniques of identification and culture. - 2 sections of ~20 university students - Lab meetings with Professors and Staff- Designed for health sciences and nursing majorsProfessor: Dr. Carol Lauzon*Teaching the Lab Section of "Human Anatomy and Physiology I" (BIO270)An integrated approach to essential concepts of human physiology and anatomy. Analysis of tissues, and of the skeletal, muscular, nervous, cardiovascular and respiratory systems.Professor Michael Hedrick -
Visiting Scientist - Chiu LabStanford University Jun 2022 - Oct 2022Palo Alto, California, United States- Weekly lab meetings, weekly Journal Clubs- Ribozymes, HIV, DENV, SARS-coronavirus- Nuclear Pore Complex (NPC)- Golgi apparatus (GA), Organelle Structural BiologyPresentation: “Pioneering Organelle Structural Biology” Cells 2023 ConferenceJournal: cells, MDPI (IF=7.666)- Cryo-EM (SPA) & Cryo-ET- Validation techniques PI- Wah Chiu, PhD -
Helix ScientistCrispr Classroom Jun 2022 - Oct 2022Pleasanton, California, United StatesMiddle School & High School outreach -
Lab Assistant IiRoche May 2022 - Aug 2022Pleasanton, California, United StatesRoche Tissue Diagnostics (RTD) Global Operations Department: Antibody Formulation Companion DiagnosticsMedical Devices and IVD productsPersonalized healthcare, Innovation, Real world data‘Doing now what patients need next.’ -
Guest SpeakerCalifornia State University, Northridge Apr 2022 - May 2022Data Science Research and Career Seminar"Data Driven Discovery of Computational Oncology and Modern Molecular Biology" -
Formulations Operator IiThermo Fisher Scientific 2021 - 2022Pleasanton, California, United StatesGenetic Sciences DivisionTAPP Robotics Lab:* Support our oligonucleotide manufacturing operations responsible for next-generation sequencing (NGS) panels• Follow written SOPs and batch records and revise as needed• Perform manufacturing/ production tasks as scheduled• Operate Hamilton Microlab Star and Bravo Velocity Robotics• Handle and work with biological and chemical reagents• Take full responsibility for the manufacture of products as delegated by the Production Team Supervisor or Team LeaderCOVID-19 Biology Lab*Package tube containers*Kit assays (12pack) -
Undergraduate Research AssistantSan Francisco State University Apr 2021 - Jun 2021Greater Visalia, Ca AreaKoehn Laboratory - Bioorganic Chemistry, Biochemistry, EnzymologyEnzyme EngineeringAdvisor: Eric Koehn, PhD -
Undergraduate Student ResearcherSan Francisco State University Aug 2020 - Jan 2021San Francisco Bay AreaDrosophila Bioinformatics and Gene AnnotationCancer Chemokine SignalingPI- Nicole Salazar Velmeshev, PhD -
Manufacturing Technician AssociateThermo Fisher Scientific Jul 2019 - Dec 2019Pleasanton, Ca• Manufacture Oligonucleotides/Custom Primers for use in the biotech industry by following established protocols and SOPs. Operate semi-automated and automated basic lab equipment. Regularly evaluate non-routine test results and either fail the product or allow it to continue through the production cycle.• Understand scientific principles in order to problem solve, troubleshoot test results, evaluate alternative choices and exercise independent judgment in selecting the best solution. Provide multiple decision options and corresponding logic/data behind the decisions. Proactively identifies production problems.• Provides feedback and contributes ideas and suggestions to new and/or improved lab techniques, protocols, processes, special handling of the product and equipment.• Balance multiple tasks. Demonstrate knowledge in the use of basic lab techniques and basic computer knowledge. Demonstrate the ability to meet standards as defined by the manufacturing process.• Inform appropriate people about problems/questions; be prepared to discuss problems/questions clearly. Work in a safe manner. Work with team members to overcome obstacles. Collaborate, support and consult with other team members as necessary. Give and receive constructive feedback• May be required to perform other related duties as required and/or assigned.Position occupies a significant role in mainstream oligonucleotide production. The role requires the ability to exercise judgment within generally defined practices and policies in selecting methods and techniques for obtaining solutions. -
Client Relationship ManagerPoshprofiles Jan 2018 - Jun 2018Livermore, CaThe role of client relations manager varies based on industry. For example, a client relations manager for an advertising agency might present a marketing plan, outline the approach and act as the go-between, providing an overview of options for branding, advertising or community outreach, taking the customer's feedback to the agency and helping refine services to meet the client's needs. In the banking industry, a client relations manager for a commercial customer might offer advice for various financial products and services, personally handle business transactions and arrange for loan serving as needed. In the retail industry, a client relations manager would likely be a vendor representative, making product recommendation to the client, providing guidance on merchandising and promotional avenues. In short, a client relations manager helps ensure every client is happy with the relationship they have with his company, and takes action to improve relations and trouble-shoot issues if problems arise.
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R & D CoordinatorDosist 2015 - 2016San Francisco, Cadosist’s innovative delivery devices are designed exclusively for our formulas to ensure a safe, controlled and accurate dose. -
Assistant General ManagerAmoura Development Company, Inc. Sep 2015 - Dec 2015San Francisco Bay Area -
Research AssistantUniversity Of Hawaii John A. Burns School Of Medicine Jan 2013 - Nov 2013Honolulu, Hi- Identified viral proteins in brain and kidney tissue sections.- Studied growth structure and development of viruses in murine models (HIV-1, JCPyV, West Nile)- Performed immunohistochemistry FFPE protocols -> sent microscopy data to PI- Captured and analyzed immunohistochemistry data with both light and confocal microscopes -- Assisted in culturing measuring in vitro BBB transmigration results on flow cytometer (bioBUBBLE)- Prepared technical reports and recommendations based upon research outcomes- Isolated and made cultures of bacteria and other microorganisms in prescribed media, controlling moisture, aeration, temperature, and nutrition- Studied neurochemistry of living processes such as cell development, breathing and digestion, and living energy changes such as growth, aging and death- Examined and tested human, animal and other material for microorganisms- Entered analysis of medical tests and clinical results into computer from storage- Set up, cleaned and maintained laboratory equipment- Analyzed samples of biological material for chemical content and reaction• Conducted NeuroAIDS preliminary research with PI Dr. Bruce Shiramizu to demonstrate autoimmune molecular mechanisms of chronic neuroinflammation during the pathogenesis of HIV-associated Neurocognitive Disorders (HAND)• Wrote grant proposal to acquire funding for research• Transcriptomic analysis via RNA in situ hybridization (QuantiGene ISH Assay) on necropsy brain sections of HAND patients• Immunohistochemistry on brain sections to co-localize cell-type and effector molecule• Light Microscopy, Fluorescent Microscopy, and Confocal MicroscopyExperiences: Phlebotomy, PBMC isolation, PBMC viability assessment, DNA isolation, qPCR, multiple cell cultures in blood-brain barrier (BBB) model, BBB permeability test: PBMC transmigration, flow cytometry -
Biology AssistantUniversity Of Hawaii John A. Burns School Of Medicine Aug 2012 - Dec 2012Honolulu, HiAssist biological and medical scientists in laboratories. Set up, operate, and maintain laboratory instruments and equipment, monitor experiments, make observations, and calculate and record results. May analyze organic substances, such as blood, food, and drugs. -
Teaching AssistantUniversity Of Hawaii At Manoa 2011 - 2012Honolulu, Hi• Lectured undergraduates on General Chemistry I laboratory protocols and concepts• Prepared supplies and reagents • Supervise students and provide instruction on all safety protocols • Constructed weekly quizzes, testing current knowledge of class • Assigned and graded all lab reports and handouts • Grade entry and calculations at end of semesterProfessor Teaching Lecture: Ian Talisman, PhD -
Computer Technical SpecialistNetxperts Inc. Oct 2009 - Feb 2010 -
Computer TechnicianRobert Half Jun 2008 - Nov 2008Pleasanton, California
Daniel Gomez Education Details
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Genetics/Genomics/Bioinformatics -
Bioimaging Informatics -
Structural Biology, Chemical And Systems Biology -
Structural Biophysics, Cryogenic Electron Microscopy (Cryo-Em) -
Structural Biology, Cryogenic Electron Tomography (Cryo-Et) -
Image Processing Workshop -
Macromolecular X-Ray Diffraction Measurement -
Cell/Cellular And Molecular Biology -
Anesthesiology -
Molecular Cell Biology (Mcb) -
Speech And Communication Studies -
Modesto High SchoolTechnical Theatre/Theatre Design And Technology
Frequently Asked Questions about Daniel Gomez
What company does Daniel Gomez work for?
Daniel Gomez works for Stanford University School Of Medicine
What is Daniel Gomez's role at the current company?
Daniel Gomez's current role is Graduate Student Trainee at Stanford University (Snyder Lab) and CSUEB (Biology) | Genetics Affiliate at Stanford Cancer Institute | StanfordMed | Comptational Systems Oncology.
What schools did Daniel Gomez attend?
Daniel Gomez attended California State University - East Bay, Indiana University School Of Medicine, Stanford University School Of Medicine, Stanford University School Of Medicine, Stanford University School Of Engineering, Stanford University, Stanford University, Caltech, San Francisco State University, Uc San Diego, University Of Hawaii John A. Burns School Of Medicine, The Johns Hopkins University School Of Medicine, University Of Hawaii At Manoa, Ohlone College, Modesto High School.
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