Madeleine Murphy Email and Phone Number
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I am currently working as a Computational Associate II in the Lander Lab/Jones Group at the Broad Institute of MIT and Harvard. I am passionate about using my skills as a computational biologist and the developing technologies in machine learning and AI for positive impacts on our environment and human health.I graduated from UCLA as a departmental scholar with an M.S. in Bioinformatics and a B.S. in Computational and Systems Biology. Special interests include machine learning & statistics, genetics, molecular biology, data-driven modeling, climate change, systems biology, and immunology.
Broad Institute Of Mit And Harvard
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Computational Associate IiBroad Institute Of Mit And Harvard Jun 2024 - PresentCambridge, Massachusetts, United States -
Computational Associate IBroad Institute Of Mit And Harvard Aug 2022 - Jun 2024Cambridge, Massachusetts, United StatesAs part of the Lander Lab and Novo Nordisk Foundation Center (NNFC), tackled multiple projects with a general focus on better understanding the genome through cellular models, for example:* Analyzed perturb (CRIPSRi) and base-edited single-cell RNA and ATAC-seq datasets in IPSCs, hepatocytes, and neuronal cells using existing statistical methods as well as novel regressions for detecting changes in gene expression.* Implemented multiple analysis pipelines ranging from eQTL detection and… Show more As part of the Lander Lab and Novo Nordisk Foundation Center (NNFC), tackled multiple projects with a general focus on better understanding the genome through cellular models, for example:* Analyzed perturb (CRIPSRi) and base-edited single-cell RNA and ATAC-seq datasets in IPSCs, hepatocytes, and neuronal cells using existing statistical methods as well as novel regressions for detecting changes in gene expression.* Implemented multiple analysis pipelines ranging from eQTL detection and annotation to parallelized donor assignment in cellular village data.I have also led workshops, presented posters at multiple conferences (NNFC Symposium, Oct 2023, and Broad Retreat, Dec 2023), and served on a panel at EMBL-EBI's program "Best practice for perturb-seq data analysis and integration", alongside leading PIs in the field. Show less -
Student ResearcherUcla Department Of Bioengineering Jan 2020 - Jun 2022Los Angeles, California, United StatesThe Meyer Lab at UCLA• Developed tensor decomposition method (in broader dimensionality reduction class) capable of handling longitudinal sample data. Master's thesis: "Continuous Tensor Factorization Effectively Reduces Data with Longitudinal Measurements" (https://escholarship.org/uc/item/45m3s58s).• Investigated tensor factorization approaches for the study of systems serology data collected from HIV and COVID-19 patients, with the goal of predicting protective immunity in patients… Show more The Meyer Lab at UCLA• Developed tensor decomposition method (in broader dimensionality reduction class) capable of handling longitudinal sample data. Master's thesis: "Continuous Tensor Factorization Effectively Reduces Data with Longitudinal Measurements" (https://escholarship.org/uc/item/45m3s58s).• Investigated tensor factorization approaches for the study of systems serology data collected from HIV and COVID-19 patients, with the goal of predicting protective immunity in patients to aid the development of vaccines. Research led to second authorship on paper: "Tensor‐structured decomposition improves systems serology analysis" doi: 10.15252/msb.202110243• Hired as a full-time undergraduate researcher for the Summer of 2020.Data analysis done in Python and Julia, and managed through GitHub. Show less -
Bioinformatics InternIdeaya Biosciences Jun 2021 - Sep 2021San Francisco Bay Area• Utilized machine learning techniques to investigate synthetic lethality interactions that indicate possible therapeutic targets in patients with cancer. • Implemented statistical methods for hypothesis testing; worked with DepMap data. -
Peer Learning Facilitator, Academic & Student ServicesUcla Athletics Sep 2019 - Jun 2021Greater Los Angeles AreaPeer tutor. Facilitate UCLA students in their understanding of class materials in various subjects. Main subjects taught include Differential and Integral Single Variable Calculus, Integration and Infinite Series, Multivariable Calculus, Differential Equations, and Genetics, Evolution, and Ecology.
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Student AssistantUcla Southern Regional Library Facility Jan 2018 - Jun 2019Greater Los Angeles Area
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Lifeguard And Swim InstructorSequoyah Country Club May 2017 - Sep 2017Oakland, Ca
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LifeguardOakland Hills Tennis Club May 2014 - Sep 2017Oakland, Ca
Madeleine Murphy Education Details
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Bioinformatics -
Computational And Systems Biology -
Bishop O'Dowd High SchoolHigh School
Frequently Asked Questions about Madeleine Murphy
What company does Madeleine Murphy work for?
Madeleine Murphy works for Broad Institute Of Mit And Harvard
What is Madeleine Murphy's role at the current company?
Madeleine Murphy's current role is Computational Associate II at the Broad Institute of MIT and Harvard.
What is Madeleine Murphy's email address?
Madeleine Murphy's email address is mm****@****ute.org
What schools did Madeleine Murphy attend?
Madeleine Murphy attended University Of California, Los Angeles, University Of California, Los Angeles, Bishop O'dowd High School.
Who are Madeleine Murphy's colleagues?
Madeleine Murphy's colleagues are Sonia Bolshakova, Joana Quintal, Mba, Cmp, Cassidy Cox, Keith Rivera, Chyna Betts, Anurag Sodhi, Anton Kovalsky.
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Madeleine Murphy
San Diego, Ca1dnc.org -
Madeleine Murphy
Postdoctoral Research Scientist | Earth And Environmental Science | Phd And Msc In GeochemistryNew York, Ny -
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