Muhammad Arshad

Muhammad Arshad Email and Phone Number

Bioinformatics Research Scientist @ New York University
Abu Dhabi, United Arab Emirates
Muhammad Arshad's Location
Abu Dhabi Emirate, United Arab Emirates, United Arab Emirates
About Muhammad Arshad

A passionate, driven and enthusiastic professional with excellent interpersonal skills, and capable of handling the projects as an individual or as a team member. Possess remarkable skills in proposal writing, presentation and establishing a collaboration with private industries and Universities. I am an energetic, motivated and effective professional who utilizes analytical and creative skills to address challenging issues in science.Excellent knowledge and research skills in the following major areas: • Molecular Biology• Biotechnology • Next Generation Sequencing • Bioinformatics Data analysis • Public Health Research • Human and Environmental Metagenomics

Muhammad Arshad's Current Company Details
New York University

New York University

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Bioinformatics Research Scientist
Abu Dhabi, United Arab Emirates
Website:
nyu.edu
Employees:
26317
Muhammad Arshad Work Experience Details
  • New York University
    Bioinformatics Research Scientist
    New York University
    Abu Dhabi, United Arab Emirates
  • New York University
    Bioinformatics Research Scientist
    New York University Nov 2019 - Present
    Abu Dhabi, United Arab Emirates
    • Deployed metaWRAP pipeline for whole-metagenome shotgun sequencing data analysis for microbiome studies• Leading a human metagenome research to study infant gut microbial community dynamics in two health contexts: a). infants born from normal-weight healthy mothers, b). infants born from obese but otherwise healthy mothers• Leading an environmental metagenome project to identify microbial communities from the extreme (hot) environment within the UAE including Eastern mangroves, Saadiyat channels and Cyanobacterial mats.• Set up a workflow for small RNA (microRNA) data analysis locally using shell script environment• Integrated the phylogenetic analysis pipeline for SARS-CoV-2 (COVID-19) research at New York University, Abu Dhabi, UAE• Contributed to other projects such as a) single cell RNA data analysis with monocle, b) running CellRanger count on 10x data, and c) identification of antibiotic resistance genes
  • University Of Calgary
    Senior R&D Bioinformatician And Strategist
    University Of Calgary Nov 2018 - Oct 2019
    Calgary, Canada Area
    • Took a lead role on the biological data analysis team; developing, implementing "omics" data analysis plan, and supervised the implementation• Analyzed whole genome sequencing data for genome-wide association study (GWAS) in children exposed to natural adversities• Analyzed mental health research and clinical trial data using longitudinal and predictive modelling• Presented results in collaborative meetings and integrated new data analysis techniques, tools and workflow into the project• Supervised Masters and PhD students and research staff for analysis design, development and training
  • University Of Calgary
    Bioinformatician
    University Of Calgary Apr 2018 - Oct 2018
    Calgary, Canada Area
    • Identified SNPs that showed association with child resilience to natural adversities• Using high throughput mRNA sequencing data, I identified differentially expressed genes in resilient verses non-resilient children• Analyzed metabolite data on cortisol stress hormone and predicted child resilience to natural disaster using cortisol and other child and family variables• Built predictive models using a data set of >15,000 subjects, and identified predictors of maternaldepression and anxiety and how they impacts child development
  • Agriculture And Agri-Food Canada
    Visiting Fellow (Nserc)
    Agriculture And Agri-Food Canada Dec 2017 - Mar 2018
    London, Canada Area
    • Through transcriptomics approach, I identified differentially expressed genes and metabolic pathway under heat stress in alfalfa• Conducted LC-MS/MS experiments to identify miR156-regulated proteins in response to heat stress in alfalfa• Carried out deep sequencing of small RNA to discover alfalfa microRNA in response to heat stress, using suitable bioinformatics tools
  • University Of Agriculture, Faisalabad
    Assistant Professor
    University Of Agriculture, Faisalabad Feb 2017 - Nov 2017
    Faisalabad, Punjab, Pakistan
    • Taught plant biotechnology and bioinformatics courses to Undergraduate, MPhil and PhD students• Supervised MPhil and PhD students on their thesis projects specifically on NGS work• Prepared and submitted research grant proposals for external funding• Performed other departmental duties related to research and student management
  • Agriculture And Agri-Food Canada
    Visiting Postdoctoral Fellow (Nserc)
    Agriculture And Agri-Food Canada Sep 2014 - Jan 2017
    London, Canada Area
    • I generated transgenic alfalfa with improved drought, salt and heat stress tolerance• Performed RNA-seq assembly and analysis of alfalfa root transcriptome (de novo and reference) in UNIX shell scripting environment• Through NGS approaches, I identified differentially expressed genes targeted by microRNA156 under drought stress• Using various molecular techniques (5‘ RACE, ChIP-qPCR etc.), I investigated miR156/SPL network and explored mechanisms how microRNA156 regulates transcription factors and downstream effector genes• Conducted physiological and molecular analysis on alfalfa plants overexpressing miR156 under mild, moderate and severe salinity stress• Planned CRISPR/Cas9 experiments to downregulate protein phosphatase 2C and improve drought stress tolerance in alfalfa
  • Simon Fraser University
    Research Assistant
    Simon Fraser University Feb 2014 - Aug 2014
    Vancouver, Canada Area
    • Assisted in developing protocol for RNA extraction and purification from Western Redcedar heartwood; the most difficult portion to get RNA • Used heartwood RNA to Synthesize cDNA libraries for RNA-seq (NGS)• Performed sequencing reactions in MiSeq Sequencing System (Illumina)
  • Simon Fraser University
    Teaching Assistant
    Simon Fraser University Sep 2011 - Aug 2013
    Vancouver, Canada Area
    • Conducted group tutorials related to class lectures• Engaged students in discussion on various topics of plant biology research• Supervised students experiments in the teaching laboratory• Delivered guest lectures to the Biology class at Simon Fraser University BC
  • Simon Fraser University
    President, Pakistani Student`S Association
    Simon Fraser University May 2011 - Apr 2012
    Burnaby, Bc, Canada
    • Organised social events including movies nights, fundraising and cultural shows • Managed executive team and looked over their duties• Public speaking
  • Simon Fraser University
    Relationship Development Experience
    Simon Fraser University Sep 2010 - Aug 2011
    Vancouver, Canada Area
    • Established a collaborative research project between Simon Fraser University BC and University of California, Davis.• Serve as a bridge to bring together Simon Fraser University BC and Monsanto Canada to jointly work on a project bearing a commercial value.• Successfully developed relationship between Simon Fraser University BC and Syngenta Canada for joint investment in the future projects. Graduate Student Mentor• Guided new comers and get them familiarized with the university facilities• Touched-based with them regarding questions and concerns• Led a small group of new students for a campus tourStudent Fundraiser• Reached out to the SFU Alumni for fundraising and relationship development • Successfully dealt with hard-customers/alumni• Patiently listened to customer’s complains and forwarded them to concerned persons

Muhammad Arshad Skills

R University Teaching Linux Genomics Data Analysis Biotechnology Pcr Single Cell Rna Sequencing Public Health Molecular Biology Artificial Intelligence Polymerase Chain Reaction Real Time Polymerase Chain Reaction Bioinformatics Environmental Microbiology Metagenomics Python Next Generation Sequencing Project Management Genetics Research Statistics

Muhammad Arshad Education Details

Frequently Asked Questions about Muhammad Arshad

What company does Muhammad Arshad work for?

Muhammad Arshad works for New York University

What is Muhammad Arshad's role at the current company?

Muhammad Arshad's current role is Bioinformatics Research Scientist.

What schools did Muhammad Arshad attend?

Muhammad Arshad attended Simon Fraser University.

What skills is Muhammad Arshad known for?

Muhammad Arshad has skills like R, University Teaching, Linux, Genomics, Data Analysis, Biotechnology, Pcr, Single Cell Rna Sequencing, Public Health, Molecular Biology, Artificial Intelligence, Polymerase Chain Reaction.

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