Nick Wagner Email & Phone Number

New York, Ny, Us

Waltham, Ma, Us

Software and Machine Learning Engineer at Thermo Fisher Scientific working with their Cellular Analysis team. My role primarily includes developing, implementing, and accelerating algorithms for computational imaging. Our team is in the process of building a versatile analysis framework with the goal of being able to apply it to many of our cell analysis instruments. Our team cross-pollinates with biologists and other subject experts to ensure we deliver the best possible product.Some of my other responsibilities include presenting results, creating clear and concise documentation, testing, and literature research. Primary languages and technologies: - C++ - C# - Python - .NET - Visual Studio - TensorRT Inference Optimizer - OpenCV

Renton, Wa, Us

Bioinformatics Scientist at Providence St. Joseph. I assist both the computational biology(research) and software engineering(clinical) groups in my team. My roles and skills utilized are listed below:Software Engineering (Clinical) - I develop and maintain high performance computational genomics pipelines utilizing cloud computing technologies such as Google Cloud Platform and Microsoft Azure. The suite of software we manage and host facilitates the review, interpretation, and reporting of clinical genomic test results; data modeling and curation for analytic analysis. Tools, technologies, and languages: Ruby, Ruby on Rails, Python, Docker, Google Cloud (BigQuery, Compute Engine), Microsoft AzureComputational Biologist (Research) - Omics data analysis of all types. Utilizing tools built for the bioinformatics community for genome alignment, filtering, and visualization. Working in a Google cloud Compute Engine virtual instance. Tools and technologies: Burrows-Wheeler aligner, BBMap, BBDuk, Samtools, deeptools

Renton, Wa, Us

Intern in the Molecular Genomics Lab at Providence St. Joseph. I assist both the computational biology and software engineering groups in my team. My roles and skills utilized are listed below:Software Engineering - I develop and maintain high performance computational genomics pipelines utilizing cloud computing technologies such as Google Cloud Platform and Microsoft Azure. The suite of software we manage and host facilitates the review, interpretation, and reporting of clinical genomic test results; data modeling and curation for analytic analysis. Tools, technologies, and languages: Ruby, Ruby on Rails, Python, Docker, Google Cloud (BigQuery, Compute Engine), Microsoft AzureComputational Biologist - Omics data analysis of all types. Utilizing tools built for the bioinformatics community for genome alignment, filtering, and visualization. Working in a Google cloud Compute Engine virtual instance. Tools and technologies: Burrows-Wheeler aligner, BBMap, BBDuk, Samtools, deeptools

Eugene, Or, Us

Worked with a team to develop a Python-based deep learning pipeline that supports multichannel image input to identify synapses through the use of pre-synaptic and post-synaptic marker colocalization. We developed an automated pipeline to increase efficiency and accuracy in locating synapses on an image that will aid in the Washbourne Lab’s goal to study Autism Spectrum Disorder. We also implemented industry-standard software architecture that included unit tests, proper documentation, and formatting through the use of Git/Github version control.

Tacoma, Wa, Us

Consulted on iRespond, a computer application that collects and stores all of the information and biometrics of fishing workers in Thailand with the intent to thwart the trafficking of illegal workers. I collaborated with a small consulting team to create the server-side API and database for our iRespond application. During my time interning I also developed strong written and interpersonal communication skills to write clear, concise code and communicate with coworkers and clients.

Managed a small crew in charge of all aspects of house painting from preparation to final inspection. Recognizing and understanding how to give the customer exactly what they want while staying out of their way was an essential part of being the crew lead.

Master'S Degree, Bioinformatics

Bachelor Of Science - Bs, Computer Science