Patrick Magee Email & Phone Number

Kingston, On, Ca

Full Stack software developer, specializing in the development of reliable, scalable and efficient cloud-based APIs for servicing the DNAstack platformMy Duties also include developing vastly scalable Bioinformatics workflows using the Workflow Descriptor Language, and working closely with clients to help analyze their data.- Lead the design, implementation and testing of key RESTful and event-based services using: Spring Boot, Wildfly, JAX-RS, JMS and Hibernate, ensuring services are performant, scalable and fault tolerant within a cloud environment.- Initiated the integration of microservices into our core platform, componentizing existing services into standalone deployments using Wildfly Swarm, leading to an increase in the scalability and reliability of the platform and a decrease in service development time- Utilized the Google Cloud platform, gaining expert knowledge in cloud APIs such as, CloudSQL, BigQuery, Container Engine, Google Compute Engine and Storage to assist in the rapid development of core services- Developed an in-depth understanding of containerization using Docker to assist service orchestration and deployment as well as to provide portable execution environments for bioinformatics workflows- Developed comprehensive integration tests using Arquillian as part of our platforms continuous integration cycle, ensuring consistency in the REST and data layers prior to services being deployed to production- Researched, developed and tested bioinformatics workflows written in the Workflow Descriptor Language, enabling clients to scale their pipelines to 100s of concurrent nodes while still optimizing the workflows for both time and cost efficiency

Contributed to the development of APIs related to the open source Beacon Project, a generalized API powering genomics data searching and sharing.- Designed and implemented the "Beacon Adapter API" providing a general interface for creating beacon adapters allowing users to initialize their own beacons from a variety of data sources- Created reference implementations of beacon adapters of VCF files implemented in J2E- Created an API for dynamically registering multiple beacon adapters to build a query interface that is capable of querying multiple beacons at once

Toronto, Canada Area

• Lead development of open source Pharmacogenomics software for clinical purposes• Attained and mastered expert knowledge in Node.js, MongoDb, Javascript, and JQuery in order to deploy a robust software with a modern and clean web interface.• Worked closely with clients to provide a product that fulfilled their needs in an intuitive, functional and lightweight manner.• Swiftly addressed any reported bugs and extensively tested prior to deployment to increase product reliability• Collaboratively worked in a team employing an AGILE development method to enable a high level of adaptability and turnaround to a rapidly evolving project.

Kingston Ontario, Canada

• Analyzed complex genomic data utilizing R, Python and the Golden Helix Software suite to find a small number of statistically significant genetic variants directing further study in a cost and time efficient manner.•Compared genetic variants believed to be deleterious to patient profiles to determine the potential clinical significance of the findings.•Employed the Golden Helix API to build custom scripts for data manipulation and visualization to meet the unique needs of Ion torrent data.• Developed in-house tools and pipelines for the analysis of whole genome, exome and methylome sequencing data.• Set up all on-site Linux workstations and ensured up to date package management across all machines

Ulm Area, Germany

• Learnt to proficiently program and model in the statistical language R• Conducted literature reviews on WNT signaling and somitogeneis and other relevant fields• Implemented a Boolean system to model somitogenesis

Bachelor Of Computer Science - Part Time

Bachelor Of Science Honours (Bsch), Life Science With A Specialization In Cancer Research, 3.79

Activities and Societies: Vice President of Queen's Climbing Club, Member of Queens Orientation Commitee 2012, Life Sciences Social.