Phan Thai Duy Tan

Phan Thai Duy Tan Email and Phone Number

Director of Bioinformatics Engineering and Software Engineering at DataXight @ DataXight
Phan Thai Duy Tan's Location
Ho Chi Minh City, Vietnam, Viet Nam
About Phan Thai Duy Tan

I have a strong passion to decipher the complexity of the human body using computer science. I have contributed to several publications in the fields of genome assembly, comparative genomics, and multi-omics single-cell sequencing, including a Genome Research paper on a novel long-read sequencing technology. I have also developed and managed products such as BioTuring DataScience Platform, BioTuring Browser, and BioTuring Enterprise Server Platform, which have been used by more than 20 pharmaceutical and biotech companies. My goal is to use my bioinformatics expertise to advance the understanding and treatment of human diseases.

Phan Thai Duy Tan's Current Company Details
DataXight

Dataxight

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Director of Bioinformatics Engineering and Software Engineering at DataXight
Phan Thai Duy Tan Work Experience Details
  • Dataxight
    Director Of Bioinformatics Engineering And Software Engineering
    Dataxight Mar 2024 - Present
    Ho Chi Minh City, Vietnam
  • Dnanexus
    Principal Bioinformatics Engineer And Manager
    Dnanexus Nov 2022 - Present
    Ho Chi Minh City, Vietnam
  • Bioturing
    Product Manager - Bioturing Datascience Platform
    Bioturing Jun 2021 - Jul 2022
    Develop the BioTuring DataScience Platform, a cloud-based platform for running and editing Jupyter notebooks to analyze single-cell datasets.
  • Bioturing
    Head Of Server Platform
    Bioturing Jan 2020 - Jul 2022
    Ho Chi Minh City, Vietnam
    Lead a team to design and implement a TCP/IP server, BioTuring Enterprise Server Platform. The software has been used by more than 20 pharmaceutical and biotech companies.Taking care of computing servers of BioTuring. Develop, deploy, maintain, and support the BioTuring Enterprise Server Platform.
  • Bioturing
    Software Engineer - Develop Bioturing Browser, A Software For Single-Cell Omics Analysis
    Bioturing Jun 2018 - Jun 2022
    Develop the analytical functions for BioTuring Browser.
  • Bioturing
    Product Manager - Develop A Genome Assembler For Tell-Seq Technology
    Bioturing Jun 2018 - Jun 2020
    Develop a genome assembler for TELL-Seq technology. The methods and results are shown in Chen et. al. 2020 (https://pubmed.ncbi.nlm.nih.gov/32540955/). Github: https://github.com/bioturing/turingassembler.Develop a pipeline for short read alignments, variant calling, and phasing for TELL-Seq technology
  • Bioturing
    Software Engineer
    Bioturing Jun 2016 - Jun 2018
    Develop BioVinci (till version 1.1.15) ), a desktop software for creating scientific graph and reports. BioVinci's citation: https://scholar.google.com/scholar?hl=vi&as_sdt=0%2C5&q=biovinci&btnG=
  • Vnuhcm - University Of Science
    Bachelor Thesis - Improve The Assembly Of The American Alligator Genome
    Vnuhcm - University Of Science Jun 2015 - Jun 2016
    Use the American alligator genome to scaffold the assemblies of two other crocodilians, the saltwater crocodile C. porosus and the gharial G. gangeticus. Used Ragout (Kolmogorov et. al. 2014) to align and find the synteny blocks shared between those crocodilians. This work helped to increase the scaffold N50 of the saltwater crocodile genome assembly from 205 kb to 84 Mb and the gharial genome assembly from 128 kb to 96 Mb. Methods and experimental results are shown in the publication Rice et. al. 2017

Phan Thai Duy Tan Skills

Research Linux Rnaseq R Product Management Single Cell Management Bioinformatics Linux Tools Compartive Genomics Genome Assembly

Phan Thai Duy Tan Education Details

Frequently Asked Questions about Phan Thai Duy Tan

What company does Phan Thai Duy Tan work for?

Phan Thai Duy Tan works for Dataxight

What is Phan Thai Duy Tan's role at the current company?

Phan Thai Duy Tan's current role is Director of Bioinformatics Engineering and Software Engineering at DataXight.

What schools did Phan Thai Duy Tan attend?

Phan Thai Duy Tan attended Vnuhcm - University Of Science.

What skills is Phan Thai Duy Tan known for?

Phan Thai Duy Tan has skills like Research, Linux, Rnaseq, R, Product Management, Single Cell, Management, Bioinformatics, Linux Tools, Compartive Genomics, Genome Assembly.

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