Scientific Manager - Dna Pipelines Process Improvement
Cambridge, United Kingdom
Co–designed, tested and implemented two separate high-throughput cherry-picking systems for the COVID-19 sequencing pipeline, enabling routine processing of over 64,000 SARS-CoV-2 samples per week. Core part of the team that designed and implemented the end-to-end COVID-19 sequencing pipeline used for the UK's Genomic Surveillance service. Helped design a series of work cells for another COVID-19 sequencing pipeline in an advisory role to external collaborators (19 work cells deployed in US). Automated multiple new processes and transition them into Operations teams including: RNA-seq pipeline (optional poly-A enrichment, globin depletion and ribosomal depletion modules). Chipmentation on Agilent BravoG&T-seq optimisation on Hamilton STAR. Designed and implemented multiple process-specific Tableau dashboards to monitor product line output and drive process improvements. Biomek Power User - Part of the inaugural EMEA cohort of 6 (and first 18 worldwide).