Scott Varney

Scott Varney Email and Phone Number

Sr. Research Investigator @ Thomas Jefferson University
Oaklyn, NJ, US
Scott Varney's Location
Oaklyn, New Jersey, United States, United States
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About Scott Varney

Technically skilled research scientist with over 14 years of cancer/cellular biology experience and a passion for engineering innovative solutions to technically challenging experimental needs. Developed detail-oriented protocols for CRISPR, molecular biology, viral expression systems, sample collection for proteomic analysis and more, while maintaining a commitment to teaching the conceptual principles behind the details. Designed, constructed, and functionally tested a novel ‘immune-evading’ doxycycline inducible lentiviral expression system enabling inducible expression in syngeneic tumor models in immune competent mouse models. Played lead role in developing data analysis pipelines for immune cell profiling by flow cytometry. Focused on discovery of novel methods for stimulating anti-tumor immunity.

Scott Varney's Current Company Details
Thomas Jefferson University

Thomas Jefferson University

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Sr. Research Investigator
Oaklyn, NJ, US
Scott Varney Work Experience Details
  • Thomas Jefferson University
    Sr. Research Investigator
    Thomas Jefferson University
    Oaklyn, Nj, Us
  • Thomas Jefferson University
    Sr. Research Investigator
    Thomas Jefferson University Apr 2024 - Present
    Philadelphia, Pennsylvania, United States
    Sr. Research Investigator - Department of Cancer Biology April 2024 – present• Led team of bioinformaticians and an immunologist in developing a flow cytometry analysis pipeline that outputs ‘contact-sheet’ of plots representing statistically significant changes in tumor-infiltrating lymphocytes (TIL) using robust-statistical methods.• Collaborated with immunologist to perform TIL analysis from inducible pyroptosis tumor models (see tet-inducible lentiviral expression system details below).• Developed protocol for sample collection of conditioned media for proteomic secretome-analysis to meet Broad Institute QC-standards and collected the first sample sets submitted by our lab.• Completed progress reports for Melanoma Research Institute of Excellence (MRIE) progress reports.• Presented at the Melanoma Research Institute of Excellence (MRIE) annual retreat 2024.• Supervised technician to design and clone of 5 additional lentiviral expression vectors.• Supervised technicians and graduate students to generate 4 additional CRISPR knockout cell-line models.
  • Thomas Jefferson University
    Associate Researcher
    Thomas Jefferson University Sep 2022 - Mar 2024
    Philadelphia, Pennsylvania, United States
    Research Associate - Department of Cancer Biology • Designed and cloned a novel, single vector, tet-inducible, lentiviral expression plasmid, designed to reduce antigenicity of the tet-transactivator to prevent immune rejection. Performed in vitro validation tests that demonstrating superior doxycycline sensitivity compared to older systems. Performed in vivo validation experiments demonstrating inducible expression in immune competent animals without rejection, while confirming that older tetR-based systems led to rejection in immune competent animals using the same cell line. This system has generated data in Wilski et. al., Cancer Discov. 2024 (In Revision) and is currently supporting 3 additional projects.• Personally generated over 10 transgenic tumor model cell lines, and directed technicians/colleagues to generate over 20 additional models.• Assessed tumor growth and response to immune checkpoint inhibitors in tet-regulated transgenic tumor cell-lines that undergo inflammatory cell death (pyroptosis) in response to doxycycline.• Authored multiple molecular biology protocols (e.g. molecular cloning, qPCR, detection of gene editing) and taught graduate students, technicians, and postdocs relevant skills (PCR, primer design, T7EI, etc).• Gave a CRISPR mini-course to multiple labs (Jefferson and Drexel Universities).• Interviewed candidate technicians and subsequently trained recommended candidate in CRISPR and molecular cloning technologies, who generated 4 new knockout cell lines, submitted samples for RNAseq and RPPA analysis within the first 5 months.• Collaborated with co-investigators to obtain a Melanoma Research Institute of Excellence Pilot Award to investigate metabolic inhibitor-induced inflammatory cell death (2023).• Mentored 3-5 PhD candidates and 4-6 research technicians.• Presented research in working group meetings (e.g. immunogenic cell death and uveal melanoma clinician working groups).• Completed DoD final progress report 2023.
  • Thomas Jefferson University
    Postdoctoral Research Fellow
    Thomas Jefferson University Mar 2021 - Sep 2022
    Philadelphia, Pennsylvania, United States
    Postdoctoral Research Fellow - Department of Cancer Biology Thomas Jefferson University Philadelphia, PA • Awarded for postdoctoral mentorship of 4 PhD candidate graduate students and 4 research technicians.• Developed state-of-the-art CRISPR (Cas9 RNP nucleofection) and single cell cloning protocols leading to generation of 19 knockout clones targeting 3 genes in 3 independent cell lines including a BAP1-defficient Uveal Melanoma cell line in which both in-lab and commercially sourced attempts previously failed.• Generated 6 overexpression murine melanoma cell lines enabling syngeneic tumor models to study effects on immune tumor microenvironment.• Presented findings to Uveal Melanoma Oncologists, fostering collaboration, garnering key insights from top research oncologists and access to rare patient tumor samples.• Initiated an independent collaboration with clinical researchers at Jefferson that enabled learning the process of mining clinical databases (e.g. TriNetX).• Collaborated with co-investigators to obtain a Melanoma Research Institute of Excellence Pilot Award to investigate the effect of BAP1-deficiency on inflammatory signaling in Uveal Melanoma (2022).• Peer-reviewed an article in the journal; Pigment Cell and Melanoma Research.• Completed DoD progress report 2022.
  • Albany Medical College
    Postdoctoral Researcher
    Albany Medical College Jun 2017 - Feb 2021
    Albany, New York Area
  • Albany Medical College
    Phd Candidate
    Albany Medical College Sep 2010 - May 2017

Scott Varney Skills

Healthcare Management Research Microsoft Office Data Analysis Life Sciences Cell Biology

Scott Varney Education Details

Frequently Asked Questions about Scott Varney

What company does Scott Varney work for?

Scott Varney works for Thomas Jefferson University

What is Scott Varney's role at the current company?

Scott Varney's current role is Sr. Research Investigator.

What is Scott Varney's email address?

Scott Varney's email address is sc****@****son.edu

What schools did Scott Varney attend?

Scott Varney attended Albany Medical College, Skidmore College.

What skills is Scott Varney known for?

Scott Varney has skills like Healthcare, Management, Research, Microsoft Office, Data Analysis, Life Sciences, Cell Biology.

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