Vincent Emonet Email & Phone Number

Switzerland

Lausanne, Vaud, Switzerland

Development of systems to improve access and querying of popular knowledge graphs in bioinformatics

Maastricht Area, Netherlands

- Development of the Data Science Research Infrastructure, an OpenShift cluster for academic researchers to deploy Data Science services and jobs (Kubernetes, MapR) https://dsri.maastrichtuniversity.nl- Development of data2services, a framework to generate services out of structured data using semantically meaningful data model (Docker, Java) http://d2s.semanticscience.org- Conversion of structured data, such as DrugBank and HGNC, to the BioLink model; a semantically relevant RDF model for bioentities associations (SPARQL)- Work on data representation and services generation to solve complex biomedical questions for the NCATS Data Translator program- Build RDF knowledge graphs to perform graph embeddings (bio2vec project)- Published 'Data2Services: enabling automated conversion of data to services' at SWAT4LS

Paris Area, France

- Involved in the development of a Natural Language Understanding (NLU) tool to build chatbots- Designed conversational patterns using DialogFlow framework- Analyzed conversations flow using tools like Google Analytics- Managed the multilingual aspect and translations in 6 languages of the NLU tool developed- Won the 2018 French Digital Innovation Award (http://www.grandprix-id.com/)

Montpellier Area, France

Working on multiple project at the LIRMM (Laboratory for Informatics, Robotics and Microelectronics of Montpellier)BioPortal Project (https://github.com/sifrproject)- Administration et development of a local instance of BioPortal (NCBO) for SIFR et IBC projects (http://bioportal.lirmm.fr et http://agroportal.lirmm.fr)- Feature development (model for ontologies metadata, handling multilingual ontologies, external mappings)- Put prototypes in production on the platform- Kept compatibility with main version of the NCBO BioPortal (tests). - Fixing problems pointed out by users and error in ontologies.Advanse team (https://gite.lirmm.fr/advanse)- Development of a web platform to expose Natural Language Processing program developed at the Advanse team (HTTP API and interface): http://advanse.lirmm.fr- Help packaging programs developed by the Advanse team- Advanse server administration (Slurm deployment)- Documentation productionOpen Data team (https://gite.lirmm.fr/opendata)- Packaging, test et development of the Yam++ Large Scale tool (Maven Java project)- Development of a web interface and REST API to curate ontologies alignmentsCo-author of 9 publications for those projects, I value that my contribution ends on something concrete: https://scholar.google.fr/citations?user=G59f3woAAAAJSkills: Java (Maven, Tomcat sevlet), Ruby (on Rails), JSON, OWL Ontologies, SKOS thesaurus, Docker, Linux administration (CentOS), SPARQL, Redis, web development (HTML/CSS/AngularJS)

Quebec, Canada

- Co-administrator of the bio2rdf.org project.- Set up and use of a Hadoop data platform on a cluster of CentOS servers- Develop web RESTful services that consume RDF data using Talend ETL (https://github.com/bio2rdf/bio2rdf-rest)- Develop Talend ETL components for the semantic web using Java (https://github.com/vemonet/talend4sw)- Develop Java programs that convert public biological databases to RDF format (pubmed, nextprot)Skills : semantic web, Java, JSON/XML, RESTful services, ETLPublication : http://ceur-ws.org/Vol-1272/paper_121.pdf

Québec, Canada

- Data transforms from actual biological data base format to RDF format using Talend ETL and Java for the bio2rdf.org project.- First place at the Hackathon of the 4th International Conference on Biomedial Ontology at Montreal (organised by Stanford Biomedical Informatics Research)Skills: Java, Talend ETL, Semantic Web (RDF, SPARQL)

University Of California, Berkeley

- Development of informatics tools to help the analysis of the evolution of Xyllela fastidiosa using the Python 2.7 programming language.- Installation of an Amazon Machine Image based on Linux (for Amazon Web Services)Skills: Python, DNA sequence analysis

Nice, France

Use of quantitative PCR and western blot to study expression of DNA and proteins in a laboratory that studies the mechanisms and therapeutic approaches of metabolic dysfunction and diabetes (INSERM Unit 907)

Master'S Degree, Physiology, Biotechnology And Computer Science

Biotechnology specialization - Java, JEE and Android development - Database administration (Oracle) - Project management - Knowledges.

Bachelor'S Degree, Bioinformatics

- Ada and C programming - Database management and website creation using HTML/CSS/PHP - Knowledges in genetics, physiology and medical.

Technical College Diploma, Bioengineering

Biology and biochimistry analysis specialization - Knowledges in genetics, biochemistry, molecular biology, physiology and microbiology..

Advanced High School Diploma, Mathematics Spec, Honours

In Menton, France