Yeon Bin K. Email & Phone Number

San Diego, California, United States

- Lead design and implementation of queueing system for onsite FPGA compute servers that boosted server utilization by 10x using RabbitMQ, celery, kombu, MySQL- Design and build dynamic DB + visualization for bioinformatics data using ASP.NET core, Dapper, MongoDB, MySQL, Redux- Test and verify bioinformatics analysis pipeline such as Germline, Somatic, Single Cell RNA, Repeat Tandem Caller by creating automated test suite that runs 100s of auto-triggered test for every build- Build and maintain CI/CD pipeline that runs Pull Request test, pre-merge checks, post-merge packaging

San Diego, California, United States

San Diego State University Aug 2014 - May 2016- Built Backend DB and API service is built using Python, Flask, MySQL, and SQLAlchemy that crawls and aggregates four different publicly available databases- Wrote Python library that cleans up CIGAR information for PacBio data that is currently being used by variant caller PBHoover

La Jolla, Ca

Validate variant annotation DB with 50+ millions rows by setting up post-deployment automated test using PostgreSQL, AWS EC2/S3, NHibernate, VEP, and Docker- Contribute to automated testing framework for validating secondary analysis workflow such as resequencing, libraryQC, metagenomics, RNASeq that runs in onsite SGE compute nodes

Take care of the website layout using HTML and CSS, and make changes on static web contentsResponsible for creating and mainting tutorials for 100+ databases, publishing news 3+ times a week , and curating 4,000+ resourcesAssist members of the team with web development, publicity, and data integration

Work with High-Risk HPV sequences from both published sources and clinical trials to identify variantsConstruct database of variants and attempt to draw correlation between variants and disease statusWrite various python scripts to assist parsing of FASTA alignment file and construction of variant databasePresent findings to the HPV team members and write a report to the supervisor regarding the