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Amanda Ruby Email & Phone Number

Senior Software Engineer at The New York Times
Location: Buffalo, New York, United States 6 work roles 2 schools
1 work email found @nytimes.com LinkedIn matched
✓ Verified August 2026 4 data sources Profile completeness 100%

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Work email a****@nytimes.com
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Current company
The New York Times
Role
Senior Software Engineer
Location
Buffalo, New York, United States
Company size
1 employees

Who is Amanda Ruby? Overview

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Quick answer

Amanda Ruby is listed as Senior Software Engineer at The New York Times, a with 1 employees, based in Buffalo, New York, United States. AeroLeads shows a work email signal at nytimes.com and a matched LinkedIn profile for Amanda Ruby.

Amanda Ruby previously worked as Software Engineer at The New York Times and Software Engineer/Bioinformatics Analyst at Rheonix, Inc. Amanda Ruby holds Bachelor Of Science (Bs), Biological Sciences, Computer Science Minor from University At Buffalo.

Company email context

Email format at The New York Times

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{first}.{last}@nytimes.com
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Profile bio

About Amanda Ruby

Experienced Software Engineer with a demonstrated history of working across disciplines, bridging the life sciences and the world of code. Top languages include Python and Java, with experience in web programming (Django), data processing and storage (R and relational databases), sequence analysis (Galaxy, CLC, BLAST, BioPython) and hardware control. Earned a Master of Science (MS) focused in Genetics, Genomics, and Bioinformatics from University at Buffalo through working on protein crystallization and co-authoring "Comparing Chemistry to Outcome: The Development of a Chemical Distance Metric, Coupled with Clustering and Hierarchal Visualization Applied to Macromolecular Crystallography" (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100782).

Listed skills include Research, Molecular Biology, Protein Purification, Laboratory, and 24 others.

Current workplace

Amanda Ruby's current company

Company context helps verify the profile and gives searchers a useful next step.

The New York Times
The New York Times
Senior Software Engineer
620 Eighth Avenue, New York, NY 10018, us
Website
nytimes.com
Employees
1
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6 roles

Amanda Ruby work experience

A career timeline built from the work history available for this profile.

Software Engineer/Bioinformatics Analyst

Rheonix, Inc

Ithaca, Ny, Us

- Managing resources, gathering requirements, designing, and building a new client-facing data analysis software product.- Developing, enhancing, and supporting software for Rheonix’s automated molecular diagnostic platform.- Overseeing the machine vision software operations of Rheonix products.- Advising the software department and other engineering teams on the nature of biological systems and the practical concerns of laboratory work, aiding in problem-solving and system diagnostic efforts.- Designing and implementing a database system for the storage of experimental data.- Analyzing bacterial genes for PCR primer and probe target sites for genus-specific detection.- Troubleshooting and resolving complicated problems over multiple technical disciplines to meet the needs of internal teams and external clients.

Aug 2015 - Apr 2020

Research Assistant

Center For Computational Research, University At Buffalo

- Worked with Edward Snell, CEO of the Hauptman-Woodward Medical Research Institute (HWI), to develop xTuition, an expert crystallization knowledge system- Researched the correlation between successful crystallization conditions and protein properties & crystal contacts by: o Extracting complex and diverse data from MySQL databases o Using Python to parse, clean, and filter the data into useful configurations o Applying hierarchical clustering to HWI’s large collection of chemical cocktails o Creating a database in MySQL to suit the needs of our studies o Collaborating with Gert Vriend at the Nijmegen Centre for Molecular Life Sciences in the Netherlands to gather data on protein crystal contacts from the PDB, and explore the connection between these contacts and crystallization results from HWI.- Collaborated with Janet Newman at CSIRO in Australia to create a chemical cocktail distance metric by adapting chemical fingerprinting and a prior metric to the field’s unique needs. This work was published in PLOS ONE in 2014

May 2012 - May 2015

Research Assistant

Biological Sciences, University At Buffalo

- Pursued an independent protein biochemistry project under the supervision of Dr. Paul Cullen- Expanded and bolstered the laboratory's current avenues of research

Sep 2011 - Jun 2012

Microbiology Technician Intern

Bausch + Lomb

Bridgewater, Nj, Us

- Participated in a pharmaceutical research group- Collaborated with scientists to pursue microbiological research goals- Provided support services for projects throughout the department

Jun 2011 - Aug 2011
Team & coworkers

Colleagues at The New York Times

Other employees you can reach at nytimes.com. View company contacts for 1 employees →

RF Richard Ferguson Richard Ferguson Colleague at The New York TimesFlemington, New Jersey, United States View → JK Jodi Kantor Jodi Kantor Colleague at The New York TimesBrooklyn, New York, United States View → AT Aubrey Tabaco, Cpa Aubrey Tabaco, Cpa Colleague at The New York TimesNew York City Metropolitan Area, United States View → KR Kevin Randall Kevin Randall Colleague at The New York TimesGreater Chicago Area, United States View → SH Suzanne Hogan Suzanne Hogan Colleague at The New York TimesNew York City Metropolitan Area, United States View → TL Tony L. Tony L. Colleague at The New York TimesCanada View → LS Lauren Sousa Lauren Sousa Colleague at The New York TimesNew York City Metropolitan Area, United States View → IH Ian H. Ian H. Colleague at The New York TimesHoboken, New Jersey, United States View → MJ Marie Jaquish Marie Jaquish Colleague at The New York TimesColumbus, Ohio Metropolitan Area, United States View → PF Pauline Forde Pauline Forde Colleague at The New York TimesNew York, United States View →
2 education records

Amanda Ruby education

Bachelor Of Science (Bs), Biological Sciences, Computer Science Minor

University At Buffalo

Master Of Science (Ms), Genetics, Genomics, And Bioinformatics

University At Buffalo
FAQ

Frequently asked questions about Amanda Ruby

Quick answers generated from the profile data available on this page.

What company does Amanda Ruby work for?

Amanda Ruby works for The New York Times.

What is Amanda Ruby's role at The New York Times?

Amanda Ruby is listed as Senior Software Engineer at The New York Times.

What is Amanda Ruby's email address?

AeroLeads has found 1 work email signal at @nytimes.com for Amanda Ruby at The New York Times.

Where is Amanda Ruby based?

Amanda Ruby is based in Buffalo, New York, United States while working with The New York Times.

What companies has Amanda Ruby worked for?

Amanda Ruby has worked for The New York Times, Rheonix, Inc, Center For Computational Research, University At Buffalo, Biological Sciences, University At Buffalo, and Bausch + Lomb.

Who are Amanda Ruby's colleagues at The New York Times?

Amanda Ruby's colleagues at The New York Times include Richard Ferguson, Jodi Kantor, Aubrey Tabaco, Cpa, Kevin Randall, and Suzanne Hogan.

How can I contact Amanda Ruby?

You can use AeroLeads to view verified contact signals for Amanda Ruby at The New York Times, including work email, phone, and LinkedIn data when available.

What schools did Amanda Ruby attend?

Amanda Ruby holds Bachelor Of Science (Bs), Biological Sciences, Computer Science Minor from University At Buffalo.

What skills is Amanda Ruby known for?

Amanda Ruby is listed with skills including Research, Molecular Biology, Protein Purification, Laboratory, Protein Chemistry, Python, R, and Ubuntu.

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