Corey Cox Email and Phone Number

* Application and pipeline development using HPC/Cloud computing, R/RShiny, and Python. * Build and manage data-storage and cloud compute environments using Linux. * QA/QC datasets, analyze, and prepare figures and reports for presentations and manuscripts. * Create and manage GitHub repositories and cloud-based DataMart for collaborative development.* Create documentation for pipelines, development environments, applications, git repositories, data management, and research plans.

· Developed, validated and optimized a high-throughput procedure for quantifying aldehydes in fermentation broths and cell lysates. · Prepared daily sample loads of up to 2000 sample per week for up to eight different high performance liquid chromatography (HPLC) and gas chromatography (GC) methods. · Responsible for troubleshooting and maintenance on five HPLC and four GC instruments. · Streamlined the existing sample submission procedures and created a series of Excel documents to compile statistics to further improve data and sample handling.

· Examined differences in protein expression and physiological effects of silencing RNA or cancer drug treatments using Western blot, SDS-PAGE (electrophoresis), fluorescence, interference contrast and electron microscopy in live & fixed cells and purified protein. · Cryogenically preserved and maintained viable cultures of multiple human and mammalian cell lines using best-practice cell culture techniques. · Exploited natural characteristics to purify a mammalian protein for biochemical experiments. · Optimized conditions for tubulin experiments to decrease protein required by 10-fold. · Worked as a liaison between computer scientists and neurologists to create software for biological image analysis. · Wrote Excel macros for data analysis, trained colleagues to use image capture software and wrote a supplemental reference guide, thereby reducing data analysis time three-fold. · Delivered quarterly progress reports to 10+ lab group members using PowerPoint.

· Collaborated on agenda to affect changes resulting in uniform evaluation and more awards. · Consulted with fair board president on implementation of new online registration system and helped with on-site registration.Science Fair Judge and Mentor February to April 2007, 2008

· Provided expertise at a workshop for junior high students in statistical analysis and data processing. · Led one of two teams for the Biochemistry sub-group to select projects for awards and advancement. · Counselled students on improvements for further science projects and State Fair.; Corvallis · Prepared and presented lessons for classes up to forty undergraduate students. · Taught lab & safety skills and prepared laboratory materials. · Maintained greater than 90% attendance in freshman biology course. · Administered and assisted in grading final exam.

· Scaled up production of gram-negative bacteria Pseudomonas butanovora using a sealed fermentor and controlling headspace, gas composition and nutrients to create a continuous growth process. · Used fast performance liquid chromatography (FPLC) and colorimetric assays to characterize butane monooxygenase reductase (BMOR). · Analyzed gas and liquid phases of bacterial cultures and lysates for methane-to-methanol and butane-to-butanol conversion to examine enzyme function in a reconstituted system. · Gained experience with and maintained a wide variety of laboratory equipment including,

Corvallis · Prepared and presented new material to recitation groups of ~30 students. · Participated in writing, administering and grading mid-term and final exams.

· Reduced response time for hardware & software problems from 1-2 weeks to same day. · Supervised the conversion of over 300 desktops from Windows 98 to NT. · Assisted in evaluation and modification of call-and-time monitoring database. · Helped maintain application servers and network integrity.Curriculum Vitae

· Used sequence alignment and existing mutation analysis to identify terminal binding sequence of HIV and ordered custom DNA oligomers of this region. · Designed binding experiment to resolve binding of Tat protein to TAR RNA using SDS-